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CmoCh04G030060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G030060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr04:21145431..21146017
RNA-Seq ExpressionCmoCh04G030060
SyntenyCmoCh04G030060
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052031.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.6e-2060.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN     + +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

TYK04529.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]3.6e-2060.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN     + +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

XP_011656423.1 putative pentatricopeptide repeat-containing protein At3g25970 [Cucumis sativus]7.2e-2160.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

XP_022134356.1 pentatricopeptide repeat-containing protein At2g33680-like [Momordica charantia]2.7e-2062.22Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        M QNDIHLDHYTYCSVFNAIA      +GKKVHA+AIKSG EVNHI     +ANAYAK GS DDVRKV  R+   D V WT +++ ++Q+
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH

XP_038884632.1 pentatricopeptide repeat-containing protein At3g16610-like [Benincasa hispida]2.1e-2062.92Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MC NDIHLDHYTYCSVFNAIA      SGKKVHA+AIKSGLEVN+I     +ANAYAK G  +DVRKVF R+ + D V WT +++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

TrEMBL top hitse value%identityAlignment
A0A0A0KBQ4 Uncharacterized protein3.5e-2160.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQNDI+LDHYTYCSVFNAIA       GKKVHA+AIKSGLEVN++     +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

A0A1S4E171 pentatricopeptide repeat-containing protein At2g27610-like1.7e-2060.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN     + +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

A0A5A7UEQ9 Pentatricopeptide repeat-containing protein1.7e-2060.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN     + +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

A0A5D3C2B1 Pentatricopeptide repeat-containing protein1.7e-2060.67Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ
        MCQ+DIHLD YTYCSVFNAIA      SGKKVHA+AIKSGLEVN     + +ANAYAK GS +DVRKVF+R+ + D + WT++++ ++Q
Subjt:  MCQNDIHLDHYTYCSVFNAIAE-----SGKKVHAQAIKSGLEVN-----HIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQ

A0A6J1BXL8 pentatricopeptide repeat-containing protein At2g33680-like1.3e-2062.22Show/hide
Query:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        M QNDIHLDHYTYCSVFNAIA      +GKKVHA+AIKSG EVNHI     +ANAYAK GS DDVRKV  R+   D V WT +++ ++Q+
Subjt:  MCQNDIHLDHYTYCSVFNAIA-----ESGKKVHAQAIKSGLEVNHI-----MANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH

SwissProt top hitse value%identityAlignment
Q0WNP3 Pentatricopeptide repeat-containing protein At4g18520, chloroplastic7.2e-0837.65Show/hide
Query:  DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHDIVE
        + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVFD +SN +TV WT+II+ HA+    E
Subjt:  DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHDIVE

Q5G1T1 Pentatricopeptide repeat-containing protein At3g49170, chloroplastic4.2e-0842.68Show/hide
Query:  DHYTYCSVFNAIAE-----SGKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKVFDR+ +   + WTA+I+G+ ++
Subjt:  DHYTYCSVFNAIAE-----SGKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKVFDRISNADTVLWTAIISGHAQH

Q84MA3 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial9.5e-0837.35Show/hide
Query:  DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  KVF+ +S  +  +WT+IIS ++ H
Subjt:  DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH

Q9LIQ7 Pentatricopeptide repeat-containing protein At3g24000, mitochondrial5.5e-0838.89Show/hide
Query:  CSVFNAIAESGKKVHAQAIKS----GLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHD
        C+VF  + + G+ VHA  ++S     + + + + N YAK GS ++ RKVF+++   D V WT +ISG++QHD
Subjt:  CSVFNAIAESGKKVHAQAIKS----GLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHD

Q9SVA5 Pentatricopeptide repeat-containing protein At4g395301.2e-0735.8Show/hide
Query:  DHYTYCSVFNAI-----AESGKKVHAQAIKSGLEVNHIMANA----YAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        D +T+ ++  A       + G++ H Q +K GLE N  + NA    YAK GS +D  K FD  ++ D V W ++IS +A H
Subjt:  DHYTYCSVFNAI-----AESGKKVHAQAIKSGLEVNHIMANA----YAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH

Arabidopsis top hitse value%identityAlignment
AT3G24000.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.9e-0938.89Show/hide
Query:  CSVFNAIAESGKKVHAQAIKS----GLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHD
        C+VF  + + G+ VHA  ++S     + + + + N YAK GS ++ RKVF+++   D V WT +ISG++QHD
Subjt:  CSVFNAIAESGKKVHAQAIKS----GLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHD

AT3G49170.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.0e-0942.68Show/hide
Query:  DHYTYCSVFNAIAE-----SGKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        D +T  SVF+A AE      GK++H+ AI+SGL  +V   + + YAK    GS DD RKVFDR+ +   + WTA+I+G+ ++
Subjt:  DHYTYCSVFNAIAE-----SGKKVHAQAIKSGL--EVNHIMANAYAK---RGSQDDVRKVFDRISNADTVLWTAIISGHAQH

AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein5.1e-0937.65Show/hide
Query:  DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHDIVE
        + +T CS+  A +E      G++VH+    + IK+ + V   + + YAK G   D RKVFD +SN +TV WT+II+ HA+    E
Subjt:  DHYTYCSVFNAIAES-----GKKVHA----QAIKSGLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHDIVE

AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein6.7e-0937.35Show/hide
Query:  DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        + YT+ SV NAIA       + G++ HA  +K GL     V+  + + YAKRG+ D+  KVF+ +S  +  +WT+IIS ++ H
Subjt:  DHYTYCSVFNAIA-------ESGKKVHAQAIKSGLE----VNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH

AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-0935.8Show/hide
Query:  DHYTYCSVFNAI-----AESGKKVHAQAIKSGLEVNHIMANA----YAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH
        D +T+ ++  A       + G++ H Q +K GLE N  + NA    YAK GS +D  K FD  ++ D V W ++IS +A H
Subjt:  DHYTYCSVFNAI-----AESGKKVHAQAIKSGLEVNHIMANA----YAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGA
AGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAA
TATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCAAAATGACATACACTTGGACCATTATACTTATTGTAGTGTATTTAATGCCATAGCTGAGTCGGGAAAGAAGGTTCATGCCCAGGCTATAAAATCAGGATTGGA
AGTGAATCATATAATGGCTAATGCGTATGCTAAACGTGGATCGCAGGATGATGTAAGGAAGGTTTTCGATAGAATCTCTAATGCCGATACAGTTTTGTGGACTGCTATAA
TATCAGGTCATGCTCAACACGATATTGTGGAGGGCACTCTTTGA
Protein sequenceShow/hide protein sequence
MCQNDIHLDHYTYCSVFNAIAESGKKVHAQAIKSGLEVNHIMANAYAKRGSQDDVRKVFDRISNADTVLWTAIISGHAQHDIVEGTL