CuGenDBv2

Gene ID	CmoCh04G030870
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosome-recycling factor, chloroplastic
Genome location	Cmo_Chr04:21526956..21529319
RNA-Seq Expression	CmoCh04G030870
Synteny	CmoCh04G030870
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002661 - Ribosome recycling factor IPR023584 - Ribosome recycling factor domain IPR036191 - RRF superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6602677.1 hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-130

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNFLLLRNFANPSRNFSFFV DLCNPWTSEMPGAFALP ADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

KAG7033363.1 frr [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-131

87.33

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNFLLLRNFANPSRNFSFFV DLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

XP_022953011.1 uncharacterized protein LOC111455524 [Cucurbita moschata]

1.1e-132

87.67

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

XP_022990977.1 uncharacterized protein LOC111487708 [Cucurbita maxima]

1.5e-129

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSF YR+FLLLRNFANPSRNFSFFV DLCNPWTSEMPG FALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAI+AL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

XP_023544000.1 uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo]

5.0e-130

86.67

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNFLLLRNFANPSRN SFFV DLCN WTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B2S9 Ribosome-recycling factor, chloroplastic

3.7e-115

77.33

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNF++LRNFAN + NFSF +    N WTS+    FALPP+DFIRESRRGFAKGRKSNESSTS+AEAL DIRPTIK+NASSQMEA+I AL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE+LCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

A0A5D3DLY3 Ribosome-recycling factor, chloroplastic

3.7e-115

77.33

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNF++LRNFAN + NFSF +    N WTS+    FALPP+DFIRESRRGFAKGRKSNESSTS+AEAL DIRPTIK+NASSQMEA+I AL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE+LCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

A0A6J1BWU9 Ribosome-recycling factor, chloroplastic

8.9e-117

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRS SYRNFLL RN A PSR FSFFV D    WTSE PG FALPPADFIRESRRGFAK RKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+AL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVE SG++MPLNQIA VSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHI A+CKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDT+KKM++SYPKDD+KRLEKEVDELTKKFIKSAEDLCKAKEKEI GG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

A0A6J1GLU1 Ribosome-recycling factor, chloroplastic

5.2e-133

87.67

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

A0A6J1JKE4 Ribosome-recycling factor, chloroplastic

7.0e-130

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Query:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL
        MAMFLKRSF YR+FLLLRNFANPSRNFSFFV DLCNPWTSEMPG FALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAI+AL
Subjt:  MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISAL

Query:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
        SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC
Subjt:  SGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKC

Query:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
        CEDSRQSIRRARQK                                     AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Subjt:  CEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

SwissProt top hits

e value

%identity

Alignment

B8DSA1 Ribosome-recycling factor

4.7e-22

32.41

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Query:  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIP
        +I  +A  +ME A+ +L  E +KLRTGRAS+ ++D+I V+  G   P++Q+A+VSV DS+TL+I P+D +  + +E AI+ S LGL P  DG+ +   IP
Subjt:  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIP

Query:  PLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKK
        PLT+E  + + K+  K  E+++ ++R  R+                                      A D +KK+       +DD+++   +V +LT +
Subjt:  PLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKK

Query:  FIKSAEDLCKAKEKEI
        F+  +++ C AKEKEI
Subjt:  FIKSAEDLCKAKEKEI

Q313G7 Ribosome-recycling factor

8.0e-22

33.33

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Query:  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIP
        TI      +ME A++AL  E  +LRTGRAS+ ++D I V+  G   P+NQ+A+V+V DS+T++I P+D      +E AI+ S LGL P  DG+ +   +P
Subjt:  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIP

Query:  PLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKK
        PLT+E  + + K+  K  ED++ ++R  R+                                      A + +KKM    +  +DDMKR + EV +LT  
Subjt:  PLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKK

Query:  FIKSAEDLCKAKEKEI
        F+  +E +   KEKEI
Subjt:  FIKSAEDLCKAKEKEI

Q5L0J9 Ribosome-recycling factor

1.4e-21

31.75

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Query:  ASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKE
        A  +M+ A+ A + EL+ +R GRA++G+L+ + V+  GV  P+NQ+A++SV +++ L I PYD + +K +E AI++S LGL P  DG  +  VIPPLT+E
Subjt:  ASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKE

Query:  HIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSA
          + + KLV K  ED++ ++R  R+                                      A D +KK+  +    +D+++    EV +LT   I   
Subjt:  HIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKFIKSA

Query:  EDLCKAKEKEI
        + + K KEKE+
Subjt:  EDLCKAKEKEI

Q5WFT1 Ribosome-recycling factor

1.6e-22

32.09

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Query:  IKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPP
        IKA+A ++M+ AI  LS EL+KLR GRA+  +LD + VE  G + PLNQ+A+V+V +++ L I PYD   + ++E AI+ S LGL P  DG+ +   IPP
Subjt:  IKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPP

Query:  LTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKF
        LT+E  + + +LV+K  E+S+ ++R  R+                                      A D +KK+       +D+++    ++ +LT  +
Subjt:  LTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKDDMKRLEKEVDELTKKF

Query:  IKSAEDLCKAKEKEI
        +   ++  K KE+EI
Subjt:  IKSAEDLCKAKEKEI

Q9KA66 Ribosome-recycling factor

2.7e-22

33.33

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Query:  NASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTK
        +A  +M  A  AL  EL+KLR GRA+  MLD I VE  G   PLNQ+A +SV +++ L I P+D +++ ++E AI  S LGL P  DG  +   IPPLT+
Subjt:  NASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTK

Query:  EHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAE
        E  + + KLV K  E+++ ++R  R+                   N  L +                  ++      +DD++R+ ++V +LT K+I+  +
Subjt:  EHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAE

Query:  DLCKAKEKEI
           +AKEKEI
Subjt:  DLCKAKEKEI

Arabidopsis top hits

e value

%identity

Alignment

AT3G01800.1 Ribosome recycling factor

5.6e-79

57.05

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Query:  MAMFLKRSFSYRN---FLLLRNFANPSRNFSFFVYDLCNPWTSEMPG---AFALPPADFIRESRRGFAKGRKS-NESSTSMAEALPDIRPTIKANASSQM
        MAMF++R+ S RN   FL   +    SR+FSF    + +P    M G    F L   DF+R+SRRGFAKG+KS ++S T M +A PDI PT+KA ASSQM
Subjt:  MAMFLKRSFSYRN---FLLLRNFANPSRNFSFFVYDLCNPWTSEMPG---AFALPPADFIRESRRGFAKGRKS-NESSTSMAEALPDIRPTIKANASSQM

Query:  EAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAM
        EAAI ALS +L+KLRTGRA+ GMLDHI+VE  GV+MPLN +A VSVLD KTLS+NPYDP+T+K LE AIV+SPLGL P++DG+RL+A IP LTKEHIQAM
Subjt:  EAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAM

Query:  CKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAK
        CK+VTK  E  +QSIRRARQK                                     A+DT+KK  SS PKD++KRLEKEVDELTKKF+KSAED+CK+K
Subjt:  CKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAK

Query:  EKEIT
        EKEIT
Subjt:  EKEIT

AT3G63190.1 ribosome recycling factor, chloroplast precursor

1.9e-18

29.63

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Query:  RPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAV
        +  I+ +  S+ME  I  L    + +RTGR+++ MLD I VE  G  + L  IA +S  D  +L + PYD ++LK +E AIV+S LG+ P  DG+ +   
Subjt:  RPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAV

Query:  IPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKK
        +PPLT +  + + K+V K  E+ + ++R  R+   K                                   ++  KK+S    +D++K L  ++ +L   
Subjt:  IPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKK

Query:  FIKSAEDLCKAKEKEI
        ++K  E+L K KEKE+
Subjt:  FIKSAEDLCKAKEKEI

Sequences

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CDS sequence

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ATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACTTTTCCTTCTTCGTTTACGATCTCTGTAATCC
ATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGATTTGCTAAAGGCCGAAAATCAAACGAATCTTCTACAAGTA
TGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCAAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGA
AGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAAT
AAATCCTTATGATCCTAATACACTAAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCAC
CATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGTGTGGTAAGCTCAACAGT
TGTAGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTGTTCCTTTTCCAATTGCAATGGATACAGTAAA
AAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCTGAAGACCTCTGCAAGGCTAAGG
AGAAGGAGATCACTGGAGGTTGA

mRNA sequence

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AAAAAAAAAGGGTTTTCTAAATCTCCATCCGTTGGGTTTTACGAAAAACCCTAGTTAGAAAGCTTAGCAAGCATCGACATGATCAAATAAGTCCGGGATTTCGATCCGTT
CAAGCACGACGGTCTTCTTCAATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACTTTTCCTTCTT
CGTTTACGATCTCTGTAATCCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGATTTGCTAAAGGCCGAAAAT
CAAACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCAAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAA
TTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTT
GGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATACACTAAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGA
GGTTAATTGCAGTCATTCCACCATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAA
AAGTGTGGTAAGCTCAACAGTTGTAGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTGTTCCTTTTCC
AATTGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCTG
AAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGAATATTTGGAAAAGAAGATTATCTCGTTCTCAATTTTGACAGATTAATTTAAACTCTATTATAGAGC
TTTTCATAACCCATTTTGAGGGATGAAACAGAGGCGAACATCTGTCATATTTGGAAACATAGACGCAGTCCAAATGAAATTCTGTGGGTGTTGTTTTCACCTGAATGGAT
TCACATGTGGCAACAAGTATTAGGGTTTGCTTCTTCCAACTCGAAAAGAG

Protein sequence

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MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTG
RASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNS
CRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

CmoCh04G030870 (gene) of Cucurbita moschata (Rifu) v1 genome