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CmoCh04G030980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh04G030980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNase H domain-containing protein
Genome locationCmo_Chr04:21566437..21567902
RNA-Seq ExpressionCmoCh04G030980
SyntenyCmoCh04G030980
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056546.1 hypothetical protein E6C27_scaffold288G00480 [Cucumis melo var. makuwa]1.0e-1964.84Show/hide
Query:  MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE
        +K EE +EEEVTGS+ VDVDM+SENE+ IEDEEDES+   SF+V LH PELKL IIP +L+QKP RKQ+E+ NSD H  PIRH   DI  E
Subjt:  MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE

KAE8652261.1 hypothetical protein Csa_022581 [Cucumis sativus]1.4e-1361.33Show/hide
Query:  VDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE
        VDVDM+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD H  PIRH  RD   +
Subjt:  VDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE

KAG5111059.1 hypothetical protein JHK82_040282 [Glycine max]1.2e-0950.67Show/hide
Query:  GSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD
        GS+ VD+D   E+ED +E EEDE +++  F V LH  ELKL  IPR+ E++ W +QHEQN+ D HW PI H + D
Subjt:  GSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD

KAG6578364.1 hypothetical protein SDJN03_22812, partial [Cucurbita argyrosperma subsp. sororia]1.3e-1458.44Show/hide
Query:  VTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD
        V   + +DVD +SENEDG++D+E+E +N    +V LHTP+LKL IIPR+LEQKPWR+Q+EQ NSDH+  PIRH   D
Subjt:  VTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD

KAG6602686.1 Actin-related protein 2/3 complex subunit 2A, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3997.73Show/hide
Query:  KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDIT
        KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSF VSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDI+
Subjt:  KTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDIT

TrEMBL top hitse value%identityAlignment
A0A0A0LT04 Uncharacterized protein8.4e-1259.15Show/hide
Query:  MKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE
        M+SENED IEDEEDES+   SF++ LH P+LKL II R+L+QK  RKQ+E+ NSD H  PIRH  RD   +
Subjt:  MKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE

A0A0B2R840 Uncharacterized protein8.7e-0950Show/hide
Query:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD
        TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQN  D +  PI H + D
Subjt:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD

A0A445GEX9 Uncharacterized protein8.7e-0950Show/hide
Query:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD
        TGS+ VD+D   E+EDG+E EEDE +++  FAV LH  ELKL  +PR+ E++P  +QHEQN  D +  PI H + D
Subjt:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRD

A0A5A7QQI9 Uncharacterized protein1.1e-0848.61Show/hide
Query:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRH
        TGS+ VDVD+  E+E+ +E EEDE ++  S AV LH  EL+L ++PR L+Q+P  +Q+E+ NSD H  P+ H
Subjt:  TGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRH

A0A5D3BWV4 Uncharacterized protein4.9e-2064.84Show/hide
Query:  MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE
        +K EE +EEEVTGS+ VDVDM+SENE+ IEDEEDES+   SF+V LH PELKL IIP +L+QKP RKQ+E+ NSD H  PIRH   DI  E
Subjt:  MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTAT
GAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACT
CCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAA
TTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACGGAAGAAGGACGAGAAGAAGAGGTTACCGGATCATCCAGAGTAGATGTGGACATGAAGAGCGAGAATGAAGACGGCATAGAGGATGAAGAAGATGAGAGTAT
GAATGACTACAGCTTTGCCGTTAGTCTTCATACTCCCGAACTCAAACTGCCGATTATTCCCCGGGAACTGGAACAGAAGCCCTGGCGAAAGCAGCACGAACAGAACAACT
CCGATCACCACTGGCGCCCAATCCGACATCGTGTCAGAGATATCACTGGAGAGGAGAAACGTTCAGCCACACGACATTGTGAGATTCCATTCCGGTCCTCGATTTCGCAA
TTCTAG
Protein sequenceShow/hide protein sequence
MKTEEGREEEVTGSSRVDVDMKSENEDGIEDEEDESMNDYSFAVSLHTPELKLPIIPRELEQKPWRKQHEQNNSDHHWRPIRHRVRDITGEEKRSATRHCEIPFRSSISQ
F