CuGenDBv2

Gene ID	CmoCh04G031140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein-like protein
Genome location	Cmo_Chr04:21631576..21632055
RNA-Seq Expression	CmoCh04G031140
Synteny	CmoCh04G031140
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6602699.1 hypothetical protein SDJN03_07932, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-77

98.74

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEV+ARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSD RIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

XP_022134107.1 uncharacterized protein LOC111006461 [Momordica charantia]

5.3e-70

91.82

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEV+ARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

XP_022960038.1 uncharacterized protein LOC111460905 [Cucurbita moschata]

2.4e-78

100

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

XP_022990769.1 uncharacterized protein LOC111487551 [Cucurbita maxima]

3.8e-76

97.48

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDDDDDDENMIPEKNDKEV+ARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
         VSDRRIEEQEGLLTAIN SAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

XP_023546418.1 uncharacterized protein LOC111805523 [Cucurbita pepo subsp. pepo]

6.8e-78

99.37

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEV+ARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BYN1 uncharacterized protein LOC111006461

2.5e-70

91.82

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQC V GSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDD++DDENMIPEKN+KEV+ARRKLKDLFVSSPP +D
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTA N SAAGIG TSTTRRSLRPIS+TFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

A0A6J1FG66 uncharacterized protein LOC111445119

1.4e-68

89.38

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDV-DDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAV G PT+SPTASPV HLRRRRRKTLRMLLNR DRRRFPYQD SADPQDV DDDDDD+NMIPEKNDKEV+ARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDV-DDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQE LLT  N SAAGIGT S TRRSLRPIS TFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

A0A6J1H7N8 uncharacterized protein LOC111460905

1.1e-78

100

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

A0A6J1JSX9 uncharacterized protein LOC111487551

1.8e-76

97.48

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED
        MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDVDDDDDDENMIPEKNDKEV+ARRKLKDLFVSSPPLED
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLED

Query:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
         VSDRRIEEQEGLLTAIN SAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
Subjt:  KVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

A0A6J1JYC4 uncharacterized protein LOC111489414

3.7e-69

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Query:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDV-DDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLE
        MATLHKFKLLASQCAV G PT+SPTASPV HLRRRRRKTLRMLLNRTDRRRFPYQD SADPQDV DDDDDD+NMIPEKNDKEV+ARRKLKDLFVSSPPLE
Subjt:  MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDV-DDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLE

Query:  DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE
        DKVSDRRIEEQE LLT  N SAAGIGT S TRRSLRPIS TFRYRFLRRAWRPVLV IPE
Subjt:  DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G66890.1 FUNCTIONS IN: molecular_function unknown

5.0e-18

43.1

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Query:  TLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDK--EVQARRKLKDLFVSSPPLE
        +L KFKLLA+ C+       SPT SPVIHL  RRRKTLR+LL R +DR R P         ++ ++ D+     +K DK  ++++ RKL DLFVSSPP E
Subjt:  TLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNR-TDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDK--EVQARRKLKDLFVSSPPLE

Query:  --------DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRR-----SLRPIST-TFRYRFLRRAWRPVLVAIPE
                DK +   +E +  +     ++ AG G   T RR     S+RP+S+ T R R LRR+WRPVLV IPE
Subjt:  --------DKVSDRRIEEQEGLLTAINASAAGIGTTSTTRR-----SLRPIST-TFRYRFLRRAWRPVLVAIPE

AT5G16200.1 50S ribosomal protein-related

3.6e-16

39.88

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Query:  MATLHKFKLLAS----QCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRT--DRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVS
        ++ LHKFKL A+    + +  GSPT SPT SPV +L  RRRKTLRML +++   RRR   Q     P      + D N   +K       RRKL++L V+
Subjt:  MATLHKFKLLAS----QCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRT--DRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVS

Query:  --SPPLEDKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPIST-TFRYRFLRRAWRPVLVAIPE
          SPP + +     I E+   ++ +N ++ G G   T RR     S  +FR R LR+ WRPVLV+IPE
Subjt:  --SPPLEDKVSDRRIEEQEGLLTAINASAAGIGTTSTTRRSLRPIST-TFRYRFLRRAWRPVLVAIPE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTACCTTGCATAAATTCAAGCTCTTAGCCTCCCAATGTGCCGTCACTGGTAGCCCTACCCGAAGTCCCACCGCTAGCCCCGTCATTCATCTACGCCGCCGCCGCCG
CAAAACCCTAAGAATGCTCCTCAATCGTACCGATCGCCGTCGATTTCCTTATCAAGACACCTCCGCCGATCCTCAAGATGTCGATGACGATGACGACGATGAGAATATGA
TTCCGGAAAAGAACGATAAGGAGGTACAAGCCAGGCGGAAACTCAAGGATTTGTTCGTCTCGTCGCCGCCGCTCGAGGATAAGGTTTCTGATAGGCGAATCGAAGAACAG
GAAGGACTGTTAACGGCGATTAACGCCAGCGCTGCCGGAATCGGTACGACCTCCACCACTCGCCGGTCCCTGAGACCGATATCGACTACATTTCGATACAGATTCCTCCG
GCGAGCTTGGCGGCCTGTGCTCGTCGCGATTCCGGAGTAG

mRNA sequence

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Protein sequence

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MATLHKFKLLASQCAVTGSPTRSPTASPVIHLRRRRRKTLRMLLNRTDRRRFPYQDTSADPQDVDDDDDDENMIPEKNDKEVQARRKLKDLFVSSPPLEDKVSDRRIEEQ
EGLLTAINASAAGIGTTSTTRRSLRPISTTFRYRFLRRAWRPVLVAIPE

CmoCh04G031140 (gene) of Cucurbita moschata (Rifu) v1 genome