; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G001130 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G001130
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionArabinogalactan peptide
Genome locationCmo_Chr05:470702..472204
RNA-Seq ExpressionCmoCh05G001130
SyntenyCmoCh05G001130
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585732.1 CXXC motif containing zinc binding protein, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0981.82Show/hide
Query:  SLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        SL+ALIA++ AVASVAA EAPAPSPASPA+SIAPSFVSAC A FVAL  GSTLRI
Subjt:  SLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

KAG6591454.1 hypothetical protein SDJN03_13800, partial [Cucurbita argyrosperma subsp. sororia]1.9e-0656.52Show/hide
Query:  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR
        +I  +MA VS+ S +AL+A++F V SVA   + E+PAP+PASPATS+ PS   ACV AFVAL FGS L+
Subjt:  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR

KAG6598305.1 hypothetical protein SDJN03_08083, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5699.22Show/hide
Query:  MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAVECKGAPIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPA
        MFRCCFSSSQVSAVGKEIPVKNPKPEKKSA ECKGAPIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPA
Subjt:  MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAVECKGAPIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPA

Query:  SPATSIAPSFVSACVAAFVALAFGSTLRI
        SPATSIAPSFVSACVAAFVALAFGSTLRI
Subjt:  SPATSIAPSFVSACVAAFVALAFGSTLRI

KAG7024335.1 hypothetical protein SDJN02_13149, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-0656.52Show/hide
Query:  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR
        +I  +MA VS+ S +AL+A++F V SVA   + E+PAP+PASPATS+ PS   ACV AFVAL FGS L+
Subjt:  QISESMAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR

KGN62403.1 hypothetical protein Csa_018595 [Cucumis sativus]4.1e-1266.67Show/hide
Query:  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS VSAC+AAF+ALAFGSTLRI
Subjt:  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

TrEMBL top hitse value%identityAlignment
A0A0A0LKU1 Uncharacterized protein2.0e-1266.67Show/hide
Query:  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        SP+S        +   MA +S+ SL+ALIA++FA++SVAA EAPAPSPASPATSIAPS VSAC+AAF+ALAFGSTLRI
Subjt:  SPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

A0A2P5DTQ4 Arabinogalactan peptide6.1e-0658.46Show/hide
Query:  AGVSQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        A  S ASL+ L+A++  V SV     A EAPAPSPASPA++I+PSF+SAC+AA VAL FGS +R+
Subjt:  AGVSQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

A0A2P5EL16 Arabinogalactan peptide8.0e-0659.68Show/hide
Query:  SQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        S ASL+ L+A++  V SV     A EAPAPSPASPA++I+PSF+SAC+AA VAL FGS +R+
Subjt:  SQASLVALIAIVFAVASVA----ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

A0A2Z6NC77 Uncharacterized protein2.3e-0565.45Show/hide
Query:  LVALIAIVFAVASVA-ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        L+A +A++F+V S+A A +APAPSPASPATS++PSFV+  VAA  ALAFGS LRI
Subjt:  LVALIAIVFAVASVA-ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

Q96504 CRG162.3e-0557.81Show/hide
Query:  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR
        MA VS+ S +AL+A++FAV SVA   + E+PAP PASPA S+ PS   ACV AF+AL FGS L+
Subjt:  MAGVSQASLVALIAIVFAVASVA---ATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLR

SwissProt top hitse value%identityAlignment
Q9LYF6 Arabinogalactan protein 151.3e-0554.24Show/hide
Query:  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        +S+AS+V L+ ++ +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Subjt:  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI

Arabidopsis top hitse value%identityAlignment
AT5G11740.1 arabinogalactan protein 159.3e-0754.24Show/hide
Query:  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI
        +S+AS+V L+ ++ +V + A +EAPAPSP S +++I+ SFVSA VAA  AL FGS LRI
Subjt:  VSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSFVSACVAAFVALAFGSTLRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCC
GATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAG
CTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTC
GTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGCTGTTGCTTCTCCTCATCCCAAGTCTCCGCCGTCGGGAAGGAGATTCCGGTGAAGAATCCAAAACCGGAGAAGAAATCGGCGGTGGAGTGTAAGGGAGCTCC
GATCGACGGGTCTTCTCTCAATCTCTTTCGATCCCTCTCGTCGTCTCCTTCCTCTCGCCGGAACCACCCTAACAGGCAAATATCTGAATCAATGGCCGGCGTTTCCCAAG
CTTCTCTCGTTGCTCTCATTGCCATCGTCTTCGCCGTCGCCTCCGTTGCTGCTACTGAGGCTCCCGCCCCCAGCCCTGCCTCCCCTGCTACCTCCATTGCTCCGTCGTTC
GTCTCCGCTTGCGTCGCTGCCTTCGTTGCTCTCGCCTTCGGATCTACTCTCAGGATCTGA
Protein sequenceShow/hide protein sequence
MFRCCFSSSQVSAVGKEIPVKNPKPEKKSAVECKGAPIDGSSLNLFRSLSSSPSSRRNHPNRQISESMAGVSQASLVALIAIVFAVASVAATEAPAPSPASPATSIAPSF
VSACVAAFVALAFGSTLRI