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CmoCh05G001660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G001660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionlong chain base biosynthesis protein 1-like
Genome locationCmo_Chr05:714607..715095
RNA-Seq ExpressionCmoCh05G001660
SyntenyCmoCh05G001660
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0009825 - multidimensional cell growth (biological process)
GO:0043067 - regulation of programmed cell death (biological process)
GO:0046512 - sphingosine biosynthetic process (biological process)
GO:0046513 - ceramide biosynthetic process (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004758 - serine C-palmitoyltransferase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598356.1 Long chain base biosynthesis protein 1, partial [Cucurbita argyrosperma subsp. sororia]5.2e-2797.14Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTF SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
XP_022131726.1 long chain base biosynthesis protein 1 isoform X1 [Momordica charantia]3.4e-2694.29Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MES F SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVI+FLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
XP_022962535.1 long chain base biosynthesis protein 1-like [Cucurbita moschata]1.0e-2798.57Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
XP_022997022.1 long chain base biosynthesis protein 1-like [Cucurbita maxima]5.2e-2797.14Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTF SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
XP_023545356.1 long chain base biosynthesis protein 1-like [Cucurbita pepo subsp. pepo]1.5e-2695.71Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTF SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPL+KK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
TrEMBL top hitse value%identityAlignment
A0A6J1BRU7 long chain base biosynthesis protein 1 isoform X11.6e-2694.29Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MES F SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVI+FLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
A0A6J1GIE3 long chain base biosynthesis protein 1-like1.1e-2591.43Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MES F S+VKSTLDW+TLILDAPSARAVIFGVHIGGHLFVEVLLLVVII LLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
A0A6J1HFE5 long chain base biosynthesis protein 1-like5.1e-2898.57Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
A0A6J1K3N9 long chain base biosynthesis protein 1-like2.5e-2797.14Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MESTF SIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
A0A6J1KS37 long chain base biosynthesis protein 1-like1.1e-2591.43Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        MES F S+VKSTLDW+TLILDAPSARAVIFGVHIGGHLFVEVLLLVVII LLSQKSYKPPKRPLTKK ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
SwissProt top hitse value%identityAlignment
Q10P01 Long chain base biosynthesis protein 1a7.6e-1360.29Show/hide
Query:  LSIVKST---LDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        L IV +T   L  V+   +AP ARAV+FGVHI GHL VE LL+ VI+F LS+KSYKPPK+PL++K ID
Subjt:  LSIVKST---LDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
Q6K8E7 Long chain base biosynthesis protein 1b2.9e-1260Show/hide
Query:  VTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        V+ + +AP ARAV+FG+HI GHL VE LL+  I+F LS+KSYKPPK+PLT++ +D
Subjt:  VTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
Q7G4P2 Long chain base biosynthesis protein 1c1.7e-1260Show/hide
Query:  VTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        V+ + +AP ARAV+FG+HI GHL VE LL+  I+F LS+KSYKPPK+PLT++ +D
Subjt:  VTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
Q94IB8 Long chain base biosynthesis protein 12.5e-1661.43Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        M S  + +  + L+WVT+IL++PSAR V+FGV I GH FVE LL VVII LL++KSYKPPKRPLT++ ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
Arabidopsis top hitse value%identityAlignment
AT4G36480.1 long-chain base11.8e-1761.43Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        M S  + +  + L+WVT+IL++PSAR V+FGV I GH FVE LL VVII LL++KSYKPPKRPLT++ ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
AT4G36480.2 long-chain base11.8e-1761.43Show/hide
Query:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID
        M S  + +  + L+WVT+IL++PSAR V+FGV I GH FVE LL VVII LL++KSYKPPKRPLT++ ID
Subjt:  MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRID

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCGACGTTTTTAAGTATAGTGAAATCTACATTAGACTGGGTAACCTTGATTCTCGATGCTCCTTCTGCTCGAGCAGTTATCTTTGGTGTGCATATTGGAGGACA
TTTGTTTGTGGAGGTTCTCCTTTTGGTGGTCATCATTTTTTTGCTTTCCCAGAAGAGTTACAAGCCCCCCAAGAGGCCTCTAACAAAGAAGAGAATAGATGTTATGCTGG
CAGTGTTGGATCTGCGATTTGGGTTCAAGAGGGGCACATATCGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCGACGTTTTTAAGTATAGTGAAATCTACATTAGACTGGGTAACCTTGATTCTCGATGCTCCTTCTGCTCGAGCAGTTATCTTTGGTGTGCATATTGGAGGACA
TTTGTTTGTGGAGGTTCTCCTTTTGGTGGTCATCATTTTTTTGCTTTCCCAGAAGAGTTACAAGCCCCCCAAGAGGCCTCTAACAAAGAAGAGAATAGATGTTATGCTGG
CAGTGTTGGATCTGCGATTTGGGTTCAAGAGGGGCACATATCGATAA
Protein sequenceShow/hide protein sequence
MESTFLSIVKSTLDWVTLILDAPSARAVIFGVHIGGHLFVEVLLLVVIIFLLSQKSYKPPKRPLTKKRIDVMLAVLDLRFGFKRGTYR