CuGenDBv2

Gene ID	CmoCh05G002460
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein RADIALIS-like 6
Genome location	Cmo_Chr05:1058890..1059132
RNA-Seq Expression	CmoCh05G002460
Synteny	CmoCh05G002460
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0047429 - nucleoside-triphosphate diphosphatase activity (molecular function)
InterPro domains	IPR001005 - SANT/Myb domain IPR009057 - Homeobox-like domain superfamily IPR044636 - Transcription factor RADIALIS-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598441.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-30

95.89

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Query:  SSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK
        +SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS P K
Subjt:  SSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK

KAG7029384.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-30

95.89

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Query:  SSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK
        +SSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS P K
Subjt:  SSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK

XP_022962285.1 protein RADIALIS-like 6 [Cucurbita moschata]

8.0e-35

100

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ
        MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ

XP_022997502.1 protein RADIALIS-like 4 [Cucurbita maxima]

3.7e-32

97.5

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Query:  MTSSSSSSSSS-WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK
        MTSSSSSSSSS WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS PSK
Subjt:  MTSSSSSSSSS-WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK

XP_023547022.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]

3.2e-31

94.87

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Query:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK
        +SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQ LASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS P K
Subjt:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNL9 SANT domain-containing protein

1.4e-29

93.24

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Query:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS
        TSSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYS
Subjt:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS

A0A1S3BBR2 protein RADIALIS-like 4

1.4e-29

93.24

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Query:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS
        TSSSSSSSSSWSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYS
Subjt:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS

A0A6J1HEM1 protein RADIALIS-like 6

3.9e-35

100

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ
        MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ

A0A6J1K580 protein RADIALIS-like 4

1.8e-32

97.5

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Query:  MTSSSSSSSSS-WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK
        MTSSSSSSSSS WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYS PSK
Subjt:  MTSSSSSSSSS-WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSK

A0A6J1KQS6 protein RADIALIS-like 4

4.9e-30

89.02

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Query:  MTSSSSSSSSS--WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ
        M+SSSSSSSSS  WSSKQNKVFENALTVYDKDSPDRWQKLA +VGGKTAEEVKRHYEMLVEDVHNIE GR+PLPNYS  SKQ
Subjt:  MTSSSSSSSSS--WSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ

SwissProt top hits

e value

%identity

Alignment

F4JVB8 Protein RADIALIS-like 1

1.8e-21

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Query:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        +S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+D+++IE G VP PNY T
Subjt:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

Q1A173 Protein RADIALIS-like 6

3.3e-23

69.74

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        M S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY T
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

Q1G3C4 Protein RADIALIS-like 4

6.4e-19

61.11

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Query:  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+A +VGGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q6NNN0 Protein RADIALIS-like 3

1.2e-20

62.16

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        M S+S SSS+SW+ K+NK+FE AL  YD+D+PDRW  +A +VGGK+AEEV+RHYE+L+ DV++IE+GR P PNY
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

Q8GW75 Protein RADIALIS-like 5

4.3e-23

71.05

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        M SSS SSSSSW+SKQNK+FE AL VYDKD+PDRWQ +A +VG K+AEEVKRHY++LVED+ NIE   VPLP Y T
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

Arabidopsis top hits

e value

%identity

Alignment

AT1G19510.1 RAD-like 5

3.1e-24

71.05

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        M SSS SSSSSW+SKQNK+FE AL VYDKD+PDRWQ +A +VG K+AEEVKRHY++LVED+ NIE   VPLP Y T
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

AT1G75250.1 RAD-like 6

2.3e-24

69.74

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        M S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY T
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

AT1G75250.2 RAD-like 6

2.3e-24

69.74

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Query:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        M S+S SS S W+  QNK+FE AL VYDKD+PDRW  +A +VGGKT EEVKRHY++LVED+ NIETGRVPLPNY T
Subjt:  MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

AT2G18328.1 RAD-like 4

4.6e-20

61.11

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Query:  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+A +VGGK+ EEVKRHYE+L+ DV++IE+GR P P Y
Subjt:  SSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNY

AT4G39250.1 RAD-like 1

1.3e-22

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Query:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST
        +S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A  VGGKT EEVKRHYE+LV+D+++IE G VP PNY T
Subjt:  TSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYST

Sequences

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CDS sequence

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ATGACATCTTCTTCTTCGTCGTCTTCTTCAAGCTGGAGTTCAAAGCAAAACAAGGTGTTCGAAAATGCTCTGACGGTGTACGACAAGGACTCGCCGGACCGGTGGCAGAA
GCTGGCAAGTTCCGTCGGAGGGAAGACGGCGGAGGAAGTGAAGAGGCACTACGAGATGCTGGTGGAGGACGTCCACAATATTGAGACCGGCAGAGTTCCTTTGCCCAATT
ACTCCACACCTTCAAAACAATAA

mRNA sequence

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Protein sequence

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MTSSSSSSSSSWSSKQNKVFENALTVYDKDSPDRWQKLASSVGGKTAEEVKRHYEMLVEDVHNIETGRVPLPNYSTPSKQ

CmoCh05G002460 (gene) of Cucurbita moschata (Rifu) v1 genome