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CmoCh05G002550 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G002550
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 4
Genome locationCmo_Chr05:1094874..1097437
RNA-Seq ExpressionCmoCh05G002550
SyntenyCmoCh05G002550
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]2.2e-3886.02Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

KAG6598451.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]2.4e-4595.92Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRTRVQY
        MATSPFKSSGSSSSSWTPKQNKKFE+ALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR R  Y
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRTRVQY

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.2e-3886.02Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]4.1e-45100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]6.8e-4090.32Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSGSSSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKPIVSNG+VY DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

TrEMBL top hitse value%identityAlignment
A0A1S3BBS2 protein RADIALIS-like 41.1e-3886.02Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A5A7VC75 Protein RADIALIS-like 41.1e-3886.02Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKTAEEVKRHYDIL+QDLMHIESGK+PLPNYKP+V NG++Y DEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1GIE7 protein RADIALIS-like 45.2e-3886.02Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MA++ F+SSGSSSSSWTPKQNKKFEDALA YPEDTPDRWQKVAR VGGKTAEEVKRHYDILV DLMHIESGK+PLP YKPI SN  V GDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1HFA3 protein RADIALIS-like 42.0e-45100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

A0A6J1K2Q1 protein RADIALIS-like 42.0e-45100Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
        MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.0e-2358.43Show/hide
Query:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRTR
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+     +NG +  +E+R R
Subjt:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRTR

Q1A173 Protein RADIALIS-like 69.3e-2463.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

Q6NNN0 Protein RADIALIS-like 39.6e-2162.82Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNG
        +S SSS+SWT K+NK FE ALA Y +DTPDRW  VAR VGGK+AEEV+RHY++L++D+  IESG+ P PNY+   SNG
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNG

Q8GW75 Protein RADIALIS-like 51.6e-2371.62Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI

Q9SIJ5 Protein RADIALIS-like 25.6e-2154.08Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRTR
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK    N   G +  +E+R R
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRTR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2471.62Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI
        SS SSSSSWT KQNK FE ALA+Y +DTPDRWQ VA+ VG K+AEEVKRHYDILV+DLM+IE   +PLP YK +
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI

AT1G75250.1 RAD-like 66.6e-2563.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

AT1G75250.2 RAD-like 66.6e-2563.86Show/hide
Query:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD
        +S SS S WT  QNK FE ALA+Y +DTPDRW  VA+ VGGKT EEVKRHYDILV+DL++IE+G++PLPNYK   SN     D
Subjt:  SSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGD

AT2G21650.1 Homeodomain-like superfamily protein4.0e-2254.08Show/hide
Query:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRTR
        MA+    S G  S SWT KQNK FE ALA+Y +DTPDRW  VAR VGGKT EE KR YD+LV+D+  IE+G +P P+YK    N   G +  +E+R R
Subjt:  MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSN---GTVYGDEQRTR

AT4G39250.1 RAD-like 14.3e-2458.43Show/hide
Query:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRTR
        S  SS SWT KQNK FE ALA Y +DTP+RWQ VA+ VGGKT EEVKRHY++LVQD+  IE+G +P PNY+     +NG +  +E+R R
Subjt:  SGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPI--VSNGTVYGDEQRTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGGACGCTCTGGCTTTATATCCCGAGGACACA
CCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCT
GGAAAGATACCTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGACGAGAGTGCAGTATGAACGCCAAGAATCCAATGGA
CTAAACAACGTTGAACTAGTAGCAGATGAAGCAACAATGAGGGCTTGGAGGAAGAAGCCATTGAAAGGCACAATAAGCTCGAAGCAGAAGGTGGAGATGGAAGAA
GAGACGATGGATTTGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAAGCCCTTTTAAATCTTCAGGCAGTTCTAGCTCCTCGTGGACGCCTAAGCAAAACAAAAAATTTGAGGACGCTCTGGCTTTATATCCCGAGGACACA
CCAGACCGGTGGCAAAAGGTGGCCAGGACAGTGGGTGGAAAAACAGCTGAGGAAGTAAAAAGGCATTATGATATCCTGGTGCAAGATCTCATGCATATAGAATCT
GGAAAGATACCTCTCCCCAACTACAAGCCCATTGTATCCAACGGTACAGTGTATGGTGATGAGCAGAGGACGAGAGTGCAGTATGAACGCCAAGAATCCAATGGA
CTAAACAACGTTGAACTAGTAGCAGATGAAGCAACAATGAGGGCTTGGAGGAAGAAGCCATTGAAAGGCACAATAAGCTCGAAGCAGAAGGTGGAGATGGAAGAA
GAGACGATGGATTTGTATTGA
Protein sequenceShow/hide protein sequence
MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDILVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRTRVQYERQESNG
LNNVELVADEATMRAWRKKPLKGTISSKQKVEMEEETMDLY