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CmoCh05G002640 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G002640
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSm protein F
Genome locationCmo_Chr05:1131687..1134927
RNA-Seq ExpressionCmoCh05G002640
SyntenyCmoCh05G002640
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598461.1 Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3776.79Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAER
        VPEDEEIEDAER
Subjt:  VPEDEEIEDAER

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]1.2e-3676.11Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]1.0e-3574.34Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIED ER+
Subjt:  VPEDEEIEDAERD

XP_022951684.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]1.1e-3776.11Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEE+EDAERD
Subjt:  VPEDEEIEDAERD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]6.4e-3876.99Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F5.9e-3776.11Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

A0A5D3DWN8 Sm protein F5.9e-3776.11Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

A0A6J1GJI4 Sm protein F5.3e-3876.11Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEE+EDAERD
Subjt:  VPEDEEIEDAERD

A0A6J1HD26 Sm protein F3.1e-3876.99Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

A0A6J1KQT2 Sm protein F3.1e-3876.99Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYK                          GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEEIEDAERD
        VPEDEEIEDAERD
Subjt:  VPEDEEIEDAERD

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F5.7e-2960.38Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEE
        V E+EE
Subjt:  VPEDEE

P62307 Small nuclear ribonucleoprotein F5.7e-2960.38Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEE
        V E+EE
Subjt:  VPEDEE

P62321 Small nuclear ribonucleoprotein F5.7e-2960.38Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEE
        V E+EE
Subjt:  VPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F5.7e-2960.38Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG
        MS+P+NPKPFLN LTGK V+VKLKWGMEYK                          G+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+RG
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRG

Query:  VPEDEE
        V E+EE
Subjt:  VPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F6.2e-3667.86Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGV
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV

Query:  PEDEEIEDAERD
        PEDEE+EDA++D
Subjt:  PEDEEIEDAERD

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein1.3e-2385.96Show/hide
Query:  GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD
        GFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGVPEDEE+EDA++D
Subjt:  GFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein7.9e-1033.7Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G+                          L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein7.9e-1033.7Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G+                          L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F4.4e-3767.86Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGV
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV

Query:  PEDEEIEDAERD
        PEDEE+EDA++D
Subjt:  PEDEEIEDAERD

AT4G30220.2 small nuclear ribonucleoprotein F4.4e-3767.86Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYK                          GFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+RGV
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGV

Query:  PEDEEIEDAERD
        PEDEE+EDA++D
Subjt:  PEDEEIEDAERD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATCCCAGTTAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGGTTCTATCTGCTGC
TTGTTTTCCTCGTTTCTCTTGCCTGCTGATGTTTGTACTCACTTTCGTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTG
AGGAATATATCGACGGACAATGTACTGGGAGTTTGGGAGAAATATTGATCAGGTGTAACAACGTTCTTTACCTTCGCGGAGTACCGGAGGATGAAGAGATAGAAGATGCC
GAGCGTGACTAG
mRNA sequenceShow/hide mRNA sequence
AAACAAGCCCTAGAGCGAGAGCGCCATTTTCTTCGACTCCTTGTTCTTTTGAGCTCCACAGATTTCAAACAAGCCCTTGCTCGCCATTTCGGAACCATGAGCATCCCAGT
TAACCCGAAGCCGTTTTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGGATGGAGTACAAAGGTTTGGTTCTATCTGCTGCTTGTTTTCCTCGTT
TCTCTTGCCTGCTGATGTTTGTACTCACTTTCGTTTACATTTCAGGCTTTCTTGTCTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATCGAC
GGACAATGTACTGGGAGTTTGGGAGAAATATTGATCAGGTGTAACAACGTTCTTTACCTTCGCGGAGTACCGGAGGATGAAGAGATAGAAGATGCCGAGCGTGACTAGCA
TGTAAATTTTTAGCAGCTTTTTGATGGCGTAGCAGTAGTGAAGTTTTATGATGTTATTGATACTATTTATGGCATCTCAAGGGACAGGAACACTCCAATTTGGTGGATTT
CAAAACCTGCAACAATCGGTTTGCTATCATACAAGGATGTTTTTATTTTTAAAATTGACCATTATTCTTGATCCATAAAATTTTTAAAAAATATCTCAAAATTTCTTAAC
CCTCAATTCACG
Protein sequenceShow/hide protein sequence
MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGLVLSAACFPRFSCLLMFVLTFVYISGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEIEDA
ERD