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CmoCh05G003280 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G003280
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionComplex 1 LYR protein
Genome locationCmo_Chr05:1453585..1454058
RNA-Seq ExpressionCmoCh05G003280
SyntenyCmoCh05G003280
Gene Ontology termsGO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0005759 - mitochondrial matrix (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029455.1 hypothetical protein SDJN02_07794, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-7997.47Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK+G+HPR LHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS-GRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS GRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQS-GRDRP

XP_022961619.1 uncharacterized protein LOC111462339 [Cucurbita moschata]2.2e-81100Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

XP_022997345.1 uncharacterized protein LOC111492289 [Cucurbita maxima]8.8e-7896.18Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEELITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

XP_023545212.1 uncharacterized protein LOC111804691 [Cucurbita pepo subsp. pepo]2.1e-7997.45Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK+G+ PR LHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

XP_038884246.1 uncharacterized protein LOC120075144 [Benincasa hispida]9.4e-7288.96Show/hide
Query:  MRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR
        MRLV KC+ LS HKNFL CNK+GFHPR+LHNGPDT+ ELLDRHVVKKEKSFDD+E+ELITQRRLT+TRREALSLYRDILRATRFFMWPDSRGVLWRDVLR
Subjt:  MRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLR

Query:  QNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR
        QNARKEFEDAR+E+DPEIVTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ+GRD+
Subjt:  QNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR

TrEMBL top hitse value%identityAlignment
A0A1S4DWJ1 uncharacterized protein LOC1034885692.3e-6885.99Show/hide
Query:  MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD
        M+MRLV K + LS+  KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRD
Subjt:  MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD

Query:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR
        VLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD+
Subjt:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR

A0A5A7VCD6 Complex 1 LYR protein2.3e-6885.99Show/hide
Query:  MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD
        M+MRLV K + LS+  KNFL C+K+GFHPR+LHNGPDT++ELLDRHVVKKEKS DDD ++LITQRRLTSTRREALSLYRDILRATRFFMWPDS+GVLWRD
Subjt:  MSMRLVEKCVKLST-HKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRD

Query:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR
        VLRQNARKEFEDARFE+DPEIVTRLLIGGRDAVQSALDKLAEKQR+EIDKKQSGRD+
Subjt:  VLRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR

A0A6J1CRY1 uncharacterized protein LOC1110140199.5e-7084.62Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        M++RLV KC+ LS HK+FLACNK+GFHPR+LHNGPDTIDELLDRHVVKKEKSF+D+++ELITQR LTSTRREALSLYRDI+RATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR
        LR+NARKEFE+AR+E+DPE+VTRLLIGGRDAVQSALDKLAEKQ QEIDKKQ G D+
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDR

A0A6J1HEL0 uncharacterized protein LOC1114623391.1e-81100Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

A0A6J1K786 uncharacterized protein LOC1114922894.3e-7896.18Show/hide
Query:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV
        MSMRLVEKCVKLSTHKNFLACNK G+HPR LHNGPDTIDELLD HVVKKEKSFDDDEEELITQRRLTSTRRE+LSLYRDILRATRFFMWPDSRGVLWRDV
Subjt:  MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDV

Query:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP
        LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSG DRP
Subjt:  LRQNARKEFEDARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G76060.1 LYR family of Fe/S cluster biogenesis protein7.8e-4874.42Show/hide
Query:  RLLHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG
        R LH GPDT++ELL+RH+ KKEK   D DE E + +RRLTSTRREALSLYRDILRATRFF W DSRG LWRDVLR+NARKEFE ARFETDPE++TRLLIG
Subjt:  RLLHNGPDTIDELLDRHVVKKEKS-FDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFEDARFETDPEIVTRLLIG

Query:  GRDAVQSALDKLAEKQRQEIDKKQSGRDR
        G DAV SALDKLAEKQR+ I+K++ G  R
Subjt:  GRDAVQSALDKLAEKQRQEIDKKQSGRDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACAC
CATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGATGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTC
TAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAG
GACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGAT
TGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATGAGGTTGGTAGAAAAATGTGTTAAGCTGTCAACTCACAAGAACTTTCTGGCTTGCAACAAAGTTGGTTTCCACCCTCGACTTCTGCATAATGGTCCAGACAC
CATTGATGAACTCTTAGACAGACATGTGGTAAAGAAAGAAAAGTCCTTTGATGATGATGAAGAAGAATTGATAACTCAGCGACGCCTCACCAGCACTCGACGTGAGGCTC
TAAGTCTCTACAGGGACATTCTCCGTGCAACTCGATTCTTTATGTGGCCAGATTCTCGAGGTGTCTTGTGGCGAGATGTTCTCAGGCAGAATGCACGGAAGGAGTTTGAG
GACGCCCGCTTTGAGACTGATCCAGAAATTGTGACCAGACTTCTCATTGGTGGGCGTGATGCAGTGCAGTCGGCTCTTGACAAGCTTGCTGAGAAGCAGAGGCAGGAGAT
TGATAAGAAACAAAGTGGTCGAGATCGACCCTGA
Protein sequenceShow/hide protein sequence
MSMRLVEKCVKLSTHKNFLACNKVGFHPRLLHNGPDTIDELLDRHVVKKEKSFDDDEEELITQRRLTSTRREALSLYRDILRATRFFMWPDSRGVLWRDVLRQNARKEFE
DARFETDPEIVTRLLIGGRDAVQSALDKLAEKQRQEIDKKQSGRDRP