CuGenDBv2

Gene ID	CmoCh05G003630
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	60S ribosomal protein L39
Genome location	Cmo_Chr05:1641676..1645882
RNA-Seq Expression	CmoCh05G003630
Synteny	CmoCh05G003630
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]

5.2e-22

98.21

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Query:  SRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-22

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Query:  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        LAA  R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-58

98.32

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Query:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
        RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHI+CSSPLSLV SEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD
Subjt:  RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTD

Query:  NTIRYNAKRRHWRRTKLGF
        NTIRYNAKRRHWRRTKLGF
Subjt:  NTIRYNAKRRHWRRTKLGF

RCV30551.1 hypothetical protein SETIT_6G104600v2 [Setaria italica]

5.7e-21

94.55

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Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]

8.2e-60

99.17

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Query:  AGRLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR
        A RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR
Subjt:  AGRLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR

Query:  TDNTIRYNAKRRHWRRTKLGF
        TDNTIRYNAKRRHWRRTKLGF
Subjt:  TDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LM35 Uncharacterized protein

4.1e-25

94.03

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Query:  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CFLFVAL-AAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2P5ANB0 Ribosomal protein

3.6e-21

96.36

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Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A368RK84 Uncharacterized protein

2.8e-21

94.55

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Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A6J1HDM7 uncharacterized protein LOC111462968

4.0e-60

99.17

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Query:  AGRLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR
        A RLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR
Subjt:  AGRLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLR

Query:  TDNTIRYNAKRRHWRRTKLGF
        TDNTIRYNAKRRHWRRTKLGF
Subjt:  TDNTIRYNAKRRHWRRTKLGF

K3YM29 Uncharacterized protein

2.8e-21

94.55

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Query:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RFSKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  RFSKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

2.7e-21

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

5.4e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

5.4e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

1.6e-21

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

5.4e-22

96.08

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

1.7e-18

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

6.1e-21

90.2

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

1.9e-22

94.12

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Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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mRNA sequence

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ATGGGCATTTTCCAAAGACTGCACTGGCAAGCAATTTGGGTCAATATTGATCGGTCCCACAGGGTGGCTATAGAGCTATGCCCCCCAGTAGTTAGCAGTTGGGCTGGGAG
GCTCAAAAAGGCCTTTCTGGACCAGCCCATTTACATTGTCCGTCGACGAAATGGACTTGGGGATTGCCTAGGACCGAGCAATGTTGTGCTGGCGGTCCACATAAAGTGCT
CATCTCCTCTTTCGCTCGTTTTCTCTGAAATTAGGGTTTCTGTTTCTTGTTTTCTGTTCGTAGCCCTCGCAGCCGGTTCTCGATTCTCCAAGATGCCGTCGCACAAGACC
TTCAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTCAGGACTGACAATACCATCAGGTACAATGCGAAGCGAAGGCA
CTGGCGCCGCACTAAGCTCGGATTCTGAGGTGTTTTGCATGTGATTTTCTCTTCATCCTTGGAAATTGTTTTGATCCTAATTAAGCGTTAGTAGTGGAGAAGACAGAGAA
TATAGAGCTAGATGTTTGAATTTTTGCCTCTCAATTAAGAATTTATCGAAGAGAATCTCGAGTAGTCTTTAGGGCTACTTCTATGTTAAATTTATATCTGGAGTGATGTC
AATTCGGAAGTTAATTCGTGTTGGTTTAGTTCAGTTTGGTGCTATTTCTTCTAACGCTAGTGCAGAGTTTTATTATGGCCTTTGATCATTGAAGTATTCAGGTGGATGAG
ATGAGTTTAGTATCTCTACTAGATCATCGATTGACTGGGTGCATTAGCTGCGTATCTGAACAAATTAACTCCTACAAGTGTGTTGTATGGATTTAGTTGTTAAATCTCTT
CCTCTATGTTGGAACTTTGATTTTGATTCATGAACATTCATTCACTTTCTGTCTGTGTCCGGAACTCTTCAC

Protein sequence

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MGIFQRLHWQAIWVNIDRSHRVAIELCPPVVSSWAGRLKKAFLDQPIYIVRRRNGLGDCLGPSNVVLAVHIKCSSPLSLVFSEIRVSVSCFLFVALAAGSRFSKMPSHKT
FRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

CmoCh05G003630 (gene) of Cucurbita moschata (Rifu) v1 genome