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CmoCh05G003930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G003930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr05:1769751..1770067
RNA-Seq ExpressionCmoCh05G003930
SyntenyCmoCh05G003930
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022961902.1 UPF0481 protein At3g47200-like [Cucurbita moschata]2.1e-2882.93Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        MNS EFLVKTTQSWVKE+RNYYAEP+NMSDEDF KMMLVD CFIVEFLI H    SNVSS+T+NNLDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

XP_022961905.1 UPF0481 protein At3g47200-like [Cucurbita moschata]9.6e-2980.72Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        MNS E LVK TQ+WVK +RNYYAEPI+M D+DF KMMLVD CFI+EFLI HHDQC SNVSSETQNNLDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

XP_023546108.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]2.0e-2677.11Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        MNS E LVK TQ+WVK +RNYYAEPI+M D+DF KMMLVD CFI+EFLI H+DQC SNVSSETQ  LDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

XP_023546110.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]2.0e-2679.27Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        +NS EFLVKTTQSWVKE+RNYYAEP+ MSDEDF KMMLVD CFIVEFLI H    SNVSS+T+N+LDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

XP_023547065.1 putative UPF0481 protein At3g02645 [Cucurbita pepo subsp. pepo]5.3e-1962.2Show/hide
Query:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        +S EFL K TQ+W+KE RN YAEPINM+DE FL MMLVD CF+VEFLI HH++   N   +T NNLDL+FHQR  E++ DL+
Subjt:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

TrEMBL top hitse value%identityAlignment
A0A6J1HBC7 UPF0481 protein At3g47200-like1.0e-2882.93Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        MNS EFLVKTTQSWVKE+RNYYAEP+NMSDEDF KMMLVD CFIVEFLI H    SNVSS+T+NNLDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

A0A6J1HD21 putative UPF0481 protein At3g026454.1e-1755.42Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        M+S+E L   T++ +KE RN Y EPINM+DE+FL MM+VD CF+VEFLI HH++ + N   +T NNLDL+FHQR  E++ DL+
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

A0A6J1HDJ3 UPF0481 protein At3g47200-like4.6e-2980.72Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        MNS E LVK TQ+WVK +RNYYAEPI+M D+DF KMMLVD CFI+EFLI HHDQC SNVSSETQNNLDLSFHQRY EIY DLV
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

A0A6J1HDJ8 putative UPF0481 protein At3g02645 isoform X13.3e-1962.2Show/hide
Query:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        +S EFL K TQ+W+KE RN YAEPINM+DE F+ MMLVD CF+VEFLI HH+Q   N   +T NNLDL+FHQR  E++ DL+
Subjt:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

A0A6J1HF67 UPF0481 protein At3g47200-like3.7e-1856.63Show/hide
Query:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV
        M+S+E +   T++W+KE RN Y EPINM+DE FL MM+VD CF+VEFLI HH++ + N   +T NNLDL+FHQR  EI+ DL+
Subjt:  MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI-HHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G31980.1 unknown protein1.0e-0435.42Show/hide
Query:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI
        +S E LV+  ++W + +R+ YAE + +  ++F++M++VD  F+VE L+
Subjt:  NSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI

AT5G11290.1 Plant protein of unknown function (DUF247)1.0e-0436.17Show/hide
Query:  SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI
        S E LV+  ++W + +R  Y E + +S ++++KM++VD+ F+VE L+
Subjt:  SWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGAT
GCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGAT
ATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTCATGGGAGTTCCTTGTGAAAACTACTCAAAGTTGGGTGAAAGAATCTCGAAATTACTATGCAGAACCCATAAACATGAGTGATGAAGATTTTCTTAAAATGAT
GCTTGTGGATAGTTGTTTCATAGTGGAGTTTTTGATACATCATGACCAATGCTTCTCAAATGTTTCCTCCGAGACCCAAAACAATTTAGATCTTTCCTTCCACCAAAGAT
ATGATGAGATATATATTGATTTGGTCTATTCCATCTTATACACAAAATAA
Protein sequenceShow/hide protein sequence
MNSWEFLVKTTQSWVKESRNYYAEPINMSDEDFLKMMLVDSCFIVEFLIHHDQCFSNVSSETQNNLDLSFHQRYDEIYIDLVYSILYTK