; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G004030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr05:1832418..1832825
RNA-Seq ExpressionCmoCh05G004030
SyntenyCmoCh05G004030
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022961906.1 putative UPF0481 protein At3g02645 [Cucurbita moschata]2.2e-3665.19Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--------
        M+RNL+ FE  S A ESKCIQYI FMDYLISTEEDV+L ENA IIINDIGGSAKE+SKLFN+L KF TVP  THFN I+  L E CNRRWN         
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--------

Query:  ------ASIAASYAILVIIMTLLQTIFSGISAFPK
              AS+AA  AI VII+ +LQTIFSGIS F K
Subjt:  ------ASIAASYAILVIIMTLLQTIFSGISAFPK

XP_022962574.1 putative UPF0481 protein At3g02645 [Cucurbita moschata]4.2e-3562.41Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------
        M+RNL+ FE  S A E+KCIQYI FMDYLISTEEDV+L ENA IIINDIGGSA E++KLFN+L KFATVPH T+FN I+  LHEHCN+RWN A       
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------

Query:  --------IAASYAILVIIMTLLQTIFSGISAF
                +AA  A+ VII+ LLQTIFS I  F
Subjt:  --------IAASYAILVIIMTLLQTIFSGISAF

XP_022996816.1 putative UPF0481 protein At3g02645 [Cucurbita maxima]9.0e-3865.19Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------
        M+RNL+ FE  S A ESKC QYI FMDYLISTEEDV+L ENA IIINDIGGSAKE+SKLFN+L KFATVP+ THFN I+ GL+EHCNRRWN A       
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------

Query:  --------IAASYAILVIIMTLLQTIFSGISAFPK
                +AA  AI VII+  LQTIF+GIS F K
Subjt:  --------IAASYAILVIIMTLLQTIFSGISAFPK

XP_023546110.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]1.4e-3057.46Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-
        +MRNL+ FEHF   N+SKCIQYI FMD LISTE+DVSL   A+IIINDIGGS KE+SKLFNNL KF        FN+I+  L +HCN+RWN+A  +  + 
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-

Query:  -------------AILVIIMTLLQTIFSGISAFP
                     A L+II+TLLQTIFS ISAFP
Subjt:  -------------AILVIIMTLLQTIFSGISAFP

XP_023548424.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]4.8e-3154.48Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-
        MMRNL+ FEHF   N++KCIQY+  +++LI TE+DVSL   A II+N IGGS  E+S+LFNNLGKF TVP+  HFN I   L EHCNRRWN+A     + 
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-

Query:  -------------AILVIIMTLLQTIFSGISAFP
                     AIL++++T+LQTIFS ISAFP
Subjt:  -------------AILVIIMTLLQTIFSGISAFP

TrEMBL top hitse value%identityAlignment
A0A6J1EXW9 UPF0481 protein At3g47200-like1.1e-3052.24Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-
        MMRNL+ FEHF   N++KCIQY+  +++LI TE+DVSL   A II+N+IGGS  E+S++FNNL KF TVP+  HFN I   L EHCNRRWN+A     + 
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-

Query:  -------------AILVIIMTLLQTIFSGISAFP
                      I ++++T+LQTIFSGISAFP
Subjt:  -------------AILVIIMTLLQTIFSGISAFP

A0A6J1HBC7 UPF0481 protein At3g47200-like6.7e-3156.3Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-
        +MRNL+ FEHF   N+SKCIQYI FMD LISTE+DVSL   A+IIINDIGGS KE+SKLFNNL KF        FN+I+  L +HCN+RWN+A  +  + 
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASY-

Query:  -------------AILVIIMTLLQTIFSGISAFPK
                     A L+II+TLLQT+FS +SAFPK
Subjt:  -------------AILVIIMTLLQTIFSGISAFPK

A0A6J1HBM9 putative UPF0481 protein At3g026451.1e-3665.19Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--------
        M+RNL+ FE  S A ESKCIQYI FMDYLISTEEDV+L ENA IIINDIGGSAKE+SKLFN+L KF TVP  THFN I+  L E CNRRWN         
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--------

Query:  ------ASIAASYAILVIIMTLLQTIFSGISAFPK
              AS+AA  AI VII+ +LQTIFSGIS F K
Subjt:  ------ASIAASYAILVIIMTLLQTIFSGISAFPK

A0A6J1HHH2 putative UPF0481 protein At3g026452.0e-3562.41Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------
        M+RNL+ FE  S A E+KCIQYI FMDYLISTEEDV+L ENA IIINDIGGSA E++KLFN+L KFATVPH T+FN I+  LHEHCN+RWN A       
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------

Query:  --------IAASYAILVIIMTLLQTIFSGISAF
                +AA  A+ VII+ LLQTIFS I  F
Subjt:  --------IAASYAILVIIMTLLQTIFSGISAF

A0A6J1K5T7 putative UPF0481 protein At3g026454.4e-3865.19Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------
        M+RNL+ FE  S A ESKC QYI FMDYLISTEEDV+L ENA IIINDIGGSAKE+SKLFN+L KFATVP+ THFN I+ GL+EHCNRRWN A       
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRAS------

Query:  --------IAASYAILVIIMTLLQTIFSGISAFPK
                +AA  AI VII+  LQTIF+GIS F K
Subjt:  --------IAASYAILVIIMTLLQTIFSGISAFPK

SwissProt top hitse value%identityAlignment
Q9SD53 UPF0481 protein At3g472001.1e-0629.46Show/hide
Query:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------
        N V FE F + + ++   YI FM  L++ EEDV+   N K+II +  GS  E+S+ F  + K       T + N +  G++E+  + +N           
Subjt:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------

Query:  ----SIAASYAIL-VIIMTLLQTIFSGIS
            +  +S A+L VI++T+LQ+  + +S
Subjt:  ----SIAASYAIL-VIIMTLLQTIFSGIS

Arabidopsis top hitse value%identityAlignment
AT2G28580.1 Plant protein of unknown function (DUF247)5.1e-0726.56Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRA-------
        ++RNL+  E       +    YI F+D+LI+T++DV L     I+ N +G     ++++ N L     V   +H++ I   L++H + R NR+       
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRA-------

Query:  -------SIAASYAILVIIMTLLQTIFS
                 A   A++++++TL+QT+ S
Subjt:  -------SIAASYAILVIIMTLLQTIFS

AT3G47200.1 Plant protein of unknown function (DUF247)7.9e-0829.46Show/hide
Query:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------
        N V FE F + + ++   YI FM  L++ EEDV+   N K+II +  GS  E+S+ F  + K       T + N +  G++E+  + +N           
Subjt:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------

Query:  ----SIAASYAIL-VIIMTLLQTIFSGIS
            +  +S A+L VI++T+LQ+  + +S
Subjt:  ----SIAASYAIL-VIIMTLLQTIFSGIS

AT3G47200.2 Plant protein of unknown function (DUF247)7.9e-0829.46Show/hide
Query:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------
        N V FE F + + ++   YI FM  L++ EEDV+   N K+II +  GS  E+S+ F  + K       T + N +  G++E+  + +N           
Subjt:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHST-HFNKITIGLHEHCNRRWNRA---------

Query:  ----SIAASYAIL-VIIMTLLQTIFSGIS
            +  +S A+L VI++T+LQ+  + +S
Subjt:  ----SIAASYAIL-VIIMTLLQTIFSGIS

AT3G50160.1 Plant protein of unknown function (DUF247)1.2e-0832.06Show/hide
Query:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATV-PHSTHFNKITIGLHEHCNRRWN--RASIAASY-
        NL+ FE     +  K   YI FMD LI++ EDVS   +  II N + GS  E+S LFN LGK     P+  + + +T  ++ +  R+WN  +A++   Y 
Subjt:  NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATV-PHSTHFNKITIGLHEHCNRRWN--RASIAASY-

Query:  -----------AILVIIMTLLQTIFSGISAF
                   A+ ++I T  Q+ F+  + F
Subjt:  -----------AILVIIMTLLQTIFSGISAF

AT3G50170.1 Plant protein of unknown function (DUF247)4.6e-0827.91Show/hide
Query:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATV-PHSTHFNKITIGLHEHCNRRWN--RASIAA
        +  NL+ FE     + +    YI FMD LI++ EDVS      II + + GS  E++ LFN L +     P  +H ++++  ++ + NR+WN  +A++  
Subjt:  MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATV-PHSTHFNKITIGLHEHCNRRWN--RASIAA

Query:  SY------------AILVIIMTLLQTIFS
         Y            A++++++TL Q+ ++
Subjt:  SY------------AILVIIMTLLQTIFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCGAAACTTGGTAGTATTTGAGCATTTTTCCTCGGCAAATGAGAGCAAGTGTATCCAATATATCCCATTCATGGATTATTTGATAAGCACCGAGGAAGACGTAAG
TTTATTTGAGAATGCCAAAATCATAATCAACGATATTGGAGGCAGTGCTAAAGAAATTTCAAAACTGTTTAACAATCTTGGTAAATTTGCCACAGTCCCACATAGTACCC
ACTTTAACAAAATCACTATTGGTTTACATGAGCACTGCAATAGACGTTGGAACCGAGCTTCAATTGCTGCTTCCTATGCTATCTTGGTCATTATTATGACCCTCCTTCAA
ACTATATTTTCTGGTATATCTGCCTTTCCTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGCGAAACTTGGTAGTATTTGAGCATTTTTCCTCGGCAAATGAGAGCAAGTGTATCCAATATATCCCATTCATGGATTATTTGATAAGCACCGAGGAAGACGTAAG
TTTATTTGAGAATGCCAAAATCATAATCAACGATATTGGAGGCAGTGCTAAAGAAATTTCAAAACTGTTTAACAATCTTGGTAAATTTGCCACAGTCCCACATAGTACCC
ACTTTAACAAAATCACTATTGGTTTACATGAGCACTGCAATAGACGTTGGAACCGAGCTTCAATTGCTGCTTCCTATGCTATCTTGGTCATTATTATGACCCTCCTTCAA
ACTATATTTTCTGGTATATCTGCCTTTCCTAAATAA
Protein sequenceShow/hide protein sequence
MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNLGKFATVPHSTHFNKITIGLHEHCNRRWNRASIAASYAILVIIMTLLQ
TIFSGISAFPK