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CmoCh05G004080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr05:1863759..1864317
RNA-Seq ExpressionCmoCh05G004080
SyntenyCmoCh05G004080
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022961902.1 UPF0481 protein At3g47200-like [Cucurbita moschata]2.6e-1563.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDVSLL Q  IIIND GG ++EV K+FN+LCKFVE+   D FN  +K L  HCN+RWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

XP_022961905.1 UPF0481 protein At3g47200-like [Cucurbita moschata]2.0e-1563.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDVSLL Q  IIIN+ GG D+EV K+FN+LCKFVE+   D FN  +K L  HCN+RWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

XP_022962578.1 UPF0481 protein At3g47200-like [Cucurbita moschata]7.0e-2159.38Show/hide
Query:  MDALINTKKDVSLLEQ-------------------------EGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        M+ LINT+KDV+LL +                         +GIIINDNGGCDQEV KMFNDLCKFVEQ YHDCFNNTNK L++H NRRWNKAK S
Subjt:  MDALINTKKDVSLLEQ-------------------------EGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

XP_023546108.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]2.0e-1563.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDVSLL Q  IIIN+ GG D+EV K+FN+LCKFVE+   D FN  +K L  HCN+RWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

XP_023547064.1 UPF0481 protein At3g47200-like [Cucurbita pepo subsp. pepo]6.8e-1663.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDV+LL + GIIIN+ GG D+EV K+FN+LCKFVE S  D  NN +  L +HCNRRWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

TrEMBL top hitse value%identityAlignment
A0A5A7V9C4 UPF0481 protein8.1e-1562.5Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDV+LL +E IIIND GG D+EV ++FN+LCKFV  S +D  FN+T+K L  HC+RRWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHD-CFNNTNKVLHKHCNRRWNKAKVS

A0A6J1HBC7 UPF0481 protein At3g47200-like1.2e-1563.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDVSLL Q  IIIND GG ++EV K+FN+LCKFVE+   D FN  +K L  HCN+RWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

A0A6J1HD72 UPF0481 protein At3g47200-like3.6e-1561.97Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDV+LL + GIIIN+ GG D+EV K+FN+LCKFVE S     NN +  L +HCNRRWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

A0A6J1HDJ3 UPF0481 protein At3g47200-like9.6e-1663.38Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        MD LI+T+KDVSLL Q  IIIN+ GG D+EV K+FN+LCKFVE+   D FN  +K L  HCN+RWNKAK S
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

A0A6J1HF67 UPF0481 protein At3g47200-like3.4e-2159.38Show/hide
Query:  MDALINTKKDVSLLEQ-------------------------EGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS
        M+ LINT+KDV+LL +                         +GIIINDNGGCDQEV KMFNDLCKFVEQ YHDCFNNTNK L++H NRRWNKAK S
Subjt:  MDALINTKKDVSLLEQ-------------------------EGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50150.1 Plant protein of unknown function (DUF247)7.5e-0537.5Show/hide
Query:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCF-NNTNKVLHKHCNRRWNKAKVS
        MD LIN+ +DVS L  +GII +  G  D EV  +FN LCK V     D + +  ++ ++++ +R+WN  K +
Subjt:  MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCF-NNTNKVLHKHCNRRWNKAKVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTTTGATAAACACAAAGAAAGACGTGAGTTTACTTGAACAAGAAGGAATCATAATCAATGATAATGGAGGTTGTGATCAAGAAGTTGTAAAAATGTTTAACGA
TCTTTGCAAATTTGTTGAACAATCATACCATGACTGCTTCAACAATACCAACAAAGTTTTACATAAACACTGTAATAGAAGATGGAACAAGGCGAAAGTAAGCCAAAACA
TGATAGCATACGACGATTTTTTCCCTCGAGAAATGAGAGCAAGTGTATCAAATATGTCTCATTTTGATAAGCTACGCAAGATGAATAAAACCGTCTATATCCCTCAAGTC
ATTTCCATCAGCTCATTTCACCATCGTAGTCGAAAGAATTTGATAGCCAGAGAACAATATAAGTTTCGACATTGGAATAACTTTCTAAACCGTTTGGTGACAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGCTTTGATAAACACAAAGAAAGACGTGAGTTTACTTGAACAAGAAGGAATCATAATCAATGATAATGGAGGTTGTGATCAAGAAGTTGTAAAAATGTTTAACGA
TCTTTGCAAATTTGTTGAACAATCATACCATGACTGCTTCAACAATACCAACAAAGTTTTACATAAACACTGTAATAGAAGATGGAACAAGGCGAAAGTAAGCCAAAACA
TGATAGCATACGACGATTTTTTCCCTCGAGAAATGAGAGCAAGTGTATCAAATATGTCTCATTTTGATAAGCTACGCAAGATGAATAAAACCGTCTATATCCCTCAAGTC
ATTTCCATCAGCTCATTTCACCATCGTAGTCGAAAGAATTTGATAGCCAGAGAACAATATAAGTTTCGACATTGGAATAACTTTCTAAACCGTTTGGTGACAAGATGA
Protein sequenceShow/hide protein sequence
MDALINTKKDVSLLEQEGIIINDNGGCDQEVVKMFNDLCKFVEQSYHDCFNNTNKVLHKHCNRRWNKAKVSQNMIAYDDFFPREMRASVSNMSHFDKLRKMNKTVYIPQV
ISISSFHHRSRKNLIAREQYKFRHWNNFLNRLVTR