; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G004090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger Ran-binding domain-containing protein 2-like
Genome locationCmo_Chr05:1872280..1873518
RNA-Seq ExpressionCmoCh05G004090
SyntenyCmoCh05G004090
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598581.1 hypothetical protein SDJN03_08359, partial [Cucurbita argyrosperma subsp. sororia]8.6e-6899.2Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASP AAAAAAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

XP_022962203.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X1 [Cucurbita moschata]1.6e-69100Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

XP_022962207.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita moschata]6.0e-69100Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICS
        RMRGFNFGAASNRPGWKSGDWICS
Subjt:  RMRGFNFGAASNRPGWKSGDWICS

XP_022996813.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita maxima]3.6e-6696Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF+GGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASP   A+AAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

XP_023547066.1 zinc finger Ran-binding domain-containing protein 2-like [Cucurbita pepo subsp. pepo]8.1e-6696Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASP     AAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

TrEMBL top hitse value%identityAlignment
A0A6J1BUS6 uncharacterized RNA-binding protein C17H9.04c-like3.3e-5781.68Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGG------RVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAA
        MSRPGDWNCRSC+HLNFQRR+SC RCGEPRADF GG      RVGSSSFGFTTGPDVRPGDWYCA+ NCGAHNFASRSICFKCGA KDDAS      A A
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGG------RVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAA

Query:  YDGDFTRMRGFNFGAASNRPGWKSGDWICSR
        YDGD  RMRGFNFG ASNRPGWKSGDWIC+R
Subjt:  YDGDFTRMRGFNFGAASNRPGWKSGDWICSR

A0A6J1HC36 uncharacterized RNA-binding protein C17H9.04c-like isoform X22.9e-69100Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICS
        RMRGFNFGAASNRPGWKSGDWICS
Subjt:  RMRGFNFGAASNRPGWKSGDWICS

A0A6J1HCG7 uncharacterized RNA-binding protein C17H9.04c-like isoform X17.6e-70100Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

A0A6J1K7U0 zinc finger Ran-binding domain-containing protein 2-like1.8e-6696Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
        MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF+GGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASP   A+AAAYDGDFT
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

Query:  RMRGFNFGAASNRPGWKSGDWICSR
        RMRGFNFGAASNRPGWKSGDWICSR
Subjt:  RMRGFNFGAASNRPGWKSGDWICSR

A0A6J1KQR0 uncharacterized RNA-binding protein C17H9.04c-like4.3e-5782.31Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF-----SGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAY
        MSRPGDWNCRSC+HLNFQRR+SC RCG+PRADF      GGR GSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKD+AS      AAAY
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADF-----SGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAY

Query:  DGDFTRMRGFNFGAASNRPGWKSGDWICSR
        DGD +R+RGFNFG ASNRPGWKSGDWIC+R
Subjt:  DGDFTRMRGFNFGAASNRPGWKSGDWICSR

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c7.2e-0927.81Show/hide
Query:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSF-----------------------------------------------------GFTTGP
        RPGDWNC  C   NFQRR SC RC  P         GS++F                                                      F    
Subjt:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSF-----------------------------------------------------GFTTGP

Query:  DVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT
          R GDW C    CG HNFA    C +CGAS+  A+  A  A+   +G ++
Subjt:  DVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFT

O95218 Zinc finger Ran-binding domain-containing protein 25.3e-0435.71Show/hide
Query:  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWYCAVANCGAHNFASRSICFKCGASK
        GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW C    C   N+A RS C  C   K
Subjt:  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWYCAVANCGAHNFASRSICFKCGASK

P32770 Asparagine-rich protein5.3e-0466.67Show/hide
Query:  RPGDWNCRSCHHLNFQRRESCQRCGEP
        RPGDWNC SC   NFQRR +C RC  P
Subjt:  RPGDWNCRSCHHLNFQRRESCQRCGEP

Q27294 RNA-binding protein cabeza4.1e-0441.3Show/hide
Query:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTG
        R GDW C SC++ NF  R  C RC  P+ D  G   G    G+  G
Subjt:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTG

Q5ZLX5 Zinc finger Ran-binding domain-containing protein 21.1e-0436.9Show/hide
Query:  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWYCAVANCGAHNFASRSICFKCGASK
        GDW C  + C ++NF RR SC RCG E   +    + G +  G T     R      DW C    CG  N+A RS C  C   K
Subjt:  GDWNC--RSCHHLNFQRRESCQRCG-EPRADFSGGRVGSSSFGFTTGPDVR----PGDWYCAVANCGAHNFASRSICFKCGASK

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein1.0e-0530.12Show/hide
Query:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDAS
        + GDW C++C+ LNF +   C RC +                  T   + PG+W C   +C   NF   SIC KC   +  A+
Subjt:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDAS

AT2G17975.1 zinc finger (Ran-binding) family protein6.0e-1133.81Show/hide
Query:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRM
        R GDW C  C + N+  R  C RC +PR         +S +        R GDW C    C  +N+ASR  C KCG SK+ A+ +A A   A     T +
Subjt:  RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRM

Query:  RGFNFGAAS-NRPG-----------------WKSGDWIC
          F  G  S ++PG                 W+SGDWIC
Subjt:  RGFNFGAAS-NRPG-----------------WKSGDWIC

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein3.4e-2242.62Show/hide
Query:  GDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASK-DDASPAAAAAAAAYDGDFTRMR
        GDW C +C H NF++RESCQ+CG P+  F G  V +  +  T   +V  GDWYC   NCG+HN+ASR+ C++CG  K +       A   AY  D     
Subjt:  GDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASK-DDASPAAAAAAAAYDGDFTRMR

Query:  GFNFGAASNRPGWKSGDWICSR
              A+  PGWK+GDW+C R
Subjt:  GFNFGAASNRPGWKSGDWICSR

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-3858.27Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFS--GGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAA
        MSRPGDWNCRSC HLNFQRR+SCQRCG+ R+        DF   GGR   S+FGFTTG DVRPGDWYC V NCG HNFASRS CFKCG  KD+       
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFS--GGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAA

Query:  AA----AAYDGDFTRMRGFNFGAASNRPGWKSGDWICSR
              A +D D  R R    G    R  WKSGDWIC+R
Subjt:  AA----AAYDGDFTRMRGFNFGAASNRPGWKSGDWICSR

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein8.1e-4058.87Show/hide
Query:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPR--------ADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAA
        M+RPGDWNCR C HLNFQRR+SCQRC EPR            GGR  SSSFGF TGPDVRPGDWYC + +CG HNFA+RS CFKCGA+KD+ S ++AAA 
Subjt:  MSRPGDWNCRSCHHLNFQRRESCQRCGEPR--------ADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAA

Query:  AAY-DGDFTRMRG-FNFGAASN------RPGWKSGDWICSR
          + D +    RG F FG +S+      R  WKSGDWIC R
Subjt:  AAY-DGDFTRMRG-FNFGAASN------RPGWKSGDWICSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAG
AGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCT
GCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCC
TCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAG
mRNA sequenceShow/hide mRNA sequence
AGAAAAAAAAAAAAAAGAAAAAGAAAAACCCCAAACTGCCACTGAAAGCCCAAACCTCGTTTGATTCTTCTCGATCCTCGAGAAAAAAAAAGGACAAAAATCGCAGTTCA
CCGGTATAAAACCCACCACCACCGGCTGTTTCGCCAGAGAAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCAGGCAAAAGATGAGCAGGCCGGGGG
ATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCC
TTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGC
TTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGAT
GGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCACCACTTTCAATATTTTCAAATTTAGTCCATTTTTAATTAT
GATTTTAATTTTTTCATCCCATATCTACTAAATTAATCTATAAAAAAAAAGTCAAAAATTAATGTTACAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAA
TGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTGGTAGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTC
CAATCAGAACGTCGTCGTTTTGTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGGTGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTT
ATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTACC
Protein sequenceShow/hide protein sequence
MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAA
SNRPGWKSGDWICSR