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CmoCh05G004100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUPF0481 protein At3g47200-like
Genome locationCmo_Chr05:1876400..1876967
RNA-Seq ExpressionCmoCh05G004100
SyntenyCmoCh05G004100
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004158 - Protein of unknown function DUF247, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064940.1 UPF0481 protein [Cucumis melo var. makuwa]3.4e-1877.42Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        HF+DIN+ALR HCN +WNKAKASLK NYFNTPWA++SF AAT L VLTLLQTIFS +STF S
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

KAA0064946.1 UPF0481 protein [Cucumis melo var. makuwa]2.0e-1876.19Show/hide
Query:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        Y FN I+KALR+HCN +WNKAKASLKHNYFNTPWA +SFFAA+ L +LTLLQTIFSG+S F S
Subjt:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

KAA0064947.1 UPF0481 protein [Cucumis melo var. makuwa]5.8e-1878.33Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF
        HF+DINKALR HCN +WN AKASLKHNYFNTPWAI+SF AAT L +LT+LQTIFS +STF
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF

XP_008445182.1 PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]5.8e-1878.33Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF
        HF+DINKALR HCN +WN AKASLKHNYFNTPWAI+SF AAT L +LT+LQTIFS +STF
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF

XP_008445583.2 PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo]2.0e-1876.19Show/hide
Query:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        Y FN I+KALR+HCN +WNKAKASLKHNYFNTPWA +SFFAA+ L +LTLLQTIFSG+S F S
Subjt:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

TrEMBL top hitse value%identityAlignment
A0A1S3BD29 LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like9.7e-1976.19Show/hide
Query:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        Y FN I+KALR+HCN +WNKAKASLKHNYFNTPWA +SFFAA+ L +LTLLQTIFSG+S F S
Subjt:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

A0A1S4DW65 UPF0481 protein At3g47200-like2.8e-1878.33Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF
        HF+DINKALR HCN +WN AKASLKHNYFNTPWAI+SF AAT L +LT+LQTIFS +STF
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF

A0A5A7VCM3 UPF0481 protein1.7e-1877.42Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        HF+DIN+ALR HCN +WNKAKASLK NYFNTPWA++SF AAT L VLTLLQTIFS +STF S
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

A0A5A7VD43 UPF0481 protein2.8e-1878.33Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF
        HF+DINKALR HCN +WN AKASLKHNYFNTPWAI+SF AAT L +LT+LQTIFS +STF
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF

A0A5A7VF39 UPF0481 protein9.7e-1976.19Show/hide
Query:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS
        Y FN I+KALR+HCN +WNKAKASLKHNYFNTPWA +SFFAA+ L +LTLLQTIFSG+S F S
Subjt:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G50120.1 Plant protein of unknown function (DUF247)9.9e-0839.71Show/hide
Query:  KLCEADYYHFND-----INKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS
        +LC+   +   D     ++  + R+ + +WN  +A+LKH YFN PWAIVSF AA +L VLT  Q+ ++
Subjt:  KLCEADYYHFND-----INKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS

AT3G50130.1 Plant protein of unknown function (DUF247)3.1e-0945.9Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFS
        + + ++  + R+ +R+WN  KA LKH YFN PWA  SFFAA +L VLTL Q+ F+    F+
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFS

AT3G50140.1 Plant protein of unknown function (DUF247)1.1e-0945Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF
        + ++++  + R+ NR+WN  KA+LKH YF+ PWA  SFFAA +L +LTL Q+ F+    F
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTF

AT3G50170.1 Plant protein of unknown function (DUF247)3.4e-0845.45Show/hide
Query:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS
        H + ++  + R+ NR+WN  KA+L H YFN PWA  SF AA +L +LTL Q+ ++
Subjt:  HFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS

AT4G31980.1 unknown protein1.5e-0842.86Show/hide
Query:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS
        ++F+ +++ L+ +CN  WN+ KA L+ +YF+ PWA+ S FAA LL +LT +Q++ S
Subjt:  YHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTGAGCACACCATTAATGATGAGAAGATTATTAACCCTCCATCGGTAACTAAGCTTTGTGAGGCCGATTATTACCACTTCAATGATATCAACAAAGCTTTACG
TAGACACTGCAATAGACAATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTCAATACGCCGTGGGCTATTGTTTCCTTCTTTGCAGCCACTTTACTCACTGTTT
TAACCCTCCTTCAAACTATATTCTCGGGTGTATCTACATTTTCTAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTGAGCACACCATTAATGATGAGAAGATTATTAACCCTCCATCGGTAACTAAGCTTTGTGAGGCCGATTATTACCACTTCAATGATATCAACAAAGCTTTACG
TAGACACTGCAATAGACAATGGAATAAGGCAAAAGCTTCACTCAAGCATAATTATTTCAATACGCCGTGGGCTATTGTTTCCTTCTTTGCAGCCACTTTACTCACTGTTT
TAACCCTCCTTCAAACTATATTCTCGGGTGTATCTACATTTTCTAGCTAG
Protein sequenceShow/hide protein sequence
MSSEHTINDEKIINPPSVTKLCEADYYHFNDINKALRRHCNRQWNKAKASLKHNYFNTPWAIVSFFAATLLTVLTLLQTIFSGVSTFSS