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CmoCh05G004430 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004430
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionnuclear factor Y, subunit C13
Genome locationCmo_Chr05:2064082..2064504
RNA-Seq ExpressionCmoCh05G004430
SyntenyCmoCh05G004430
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064731.1 dr1-associated corepressor [Cucumis melo var. makuwa]3.3e-6088.57Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

KAG6598611.1 Dr1-associated corepressor, partial [Cucurbita argyrosperma subsp. sororia]9.0e-6697.14Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAEEEPG+AIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AK ENRTRVVVDKVAPEGTRRIDDFFRRP KTASAETNET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

XP_022962477.1 DNA polymerase epsilon subunit C [Cucurbita moschata]1.5e-68100Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

XP_022997291.1 DNA polymerase epsilon subunit C [Cucurbita maxima]1.6e-6798.57Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

XP_023547243.1 putative transcription factor C16C4.22 [Cucurbita pepo subsp. pepo]4.5e-6596.43Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAE+E GEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENRTRVVVDKVAPEGTRRIDDFFRRP KTASAE NET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

TrEMBL top hitse value%identityAlignment
A0A0A0KGV1 CBFD_NFYB_HMF domain-containing protein8.8e-5989.78Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+E AAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAET
        AKDENRTR VVDKVAPEGTRRIDDFFRR  KT SAET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAET

A0A1S3BDL4 dr1-associated corepressor8.0e-6088.57Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALFLVSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDA 
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

A0A5A7VG98 Dr1-associated corepressor1.6e-6088.57Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        M EEE GEAIRPEFP GR+KKIMKLDKDIGKVNSEALF+VSCATELFL+LLAEKS+EVAAEKKRKTVKLEHIR+AVKRH+SI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENR R VVDKVAP GTRRIDDFFRRP KT SAETNE+
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

A0A6J1HCT3 DNA polymerase epsilon subunit C7.2e-69100Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

A0A6J1K737 DNA polymerase epsilon subunit C8.0e-6898.57Show/hide
Query:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP
        MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKS+EVAAEKKRKTVKLEHIRIAVKRHQSI DFLLDSLPLPSQPSDAP
Subjt:  MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAP

Query:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
        AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET
Subjt:  AKDENRTRVVVDKVAPEGTRRIDDFFRRPEKTASAETNET

SwissProt top hitse value%identityAlignment
B0XTT5 NCT transcriptional regulatory complex subunit A1.2e-0732.76Show/hide
Query:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V   H++ AV + + + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  VVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  VVVDKVAPEGTRRIDD

Q14919 Dr1-associated corepressor2.6e-0741.33Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD
        FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++  ++  Q   DFL D
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD

Q2YDP3 Dr1-associated corepressor2.6e-0741.33Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD
        FP  RIKKIM+ D++IGKV +    ++S A ELFLE L +K+ +V   +  KT+   H++  ++  Q   DFL D
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD

Q4X095 NCT transcriptional regulatory complex subunit A1.2e-0732.76Show/hide
Query:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSL-PLPSQPSDAPAKDENRTR
        ++ +FP+ RIK+IM+ D+D+GKV       VS A ELF+  L  K+++ A ++  K V   H++ AV + + + DFL D +  +P QP+     D++ + 
Subjt:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSL-PLPSQPSDAPAKDENRTR

Query:  VVVDKVAPEGTRRIDD
                 G RR  D
Subjt:  VVVDKVAPEGTRRIDD

Q54DA1 Dr1-associated corepressor homolog2.0e-0737.18Show/hide
Query:  RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD
        + +FPM RIKKIM+ D+++GK+ S    L+S   ELF+  L  K+ ++   KK K + + H++  +K+ +S  DFL +
Subjt:  RPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLD

Arabidopsis top hitse value%identityAlignment
AT1G07980.1 nuclear factor Y, subunit C106.3e-0935.16Show/hide
Query:  EEEPG--EAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLP
        EE+ G  E  + +FPM RI++IM+ D    ++  +A+FLV+ ATE+F+E  +E++ + + + K+K +  +H+   V   Q   +FL DS+P
Subjt:  EEEPG--EAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLP

AT3G12480.1 nuclear factor Y, subunit C111.4e-0842.47Show/hide
Query:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFL
        FP  RIKKIM+ D+D+GK+      LVS + ELFL+ L +++ E+  E+  KTV   H++  V+R+ ++ DFL
Subjt:  FPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFL

AT3G48590.1 nuclear factor Y, subunit C19.1e-0841.77Show/hide
Query:  EFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLP
        + P+ RIKKIMK D+D+  +++EA  L + A ELF+  L  +S   A E KR+T++   I  A+ R   I DFL+D +P
Subjt:  EFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLP

AT5G19490.1 Histone superfamily protein9.1e-0834.29Show/hide
Query:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRT--
        ++  FP  RIKKIM+ D+++GK+      LVS A ELFL+ L   + +V   +  KTV   H++  V+   ++ DFL D++        +  +D++ T  
Subjt:  IRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRT--

Query:  RVVVD
        R VVD
Subjt:  RVVVD

AT5G43250.1 nuclear factor Y, subunit C131.2e-3663.5Show/hide
Query:  EEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAK
        EEE G +IRPEFP+GR+KKIMKLDKDI K+NSEAL +++ +TELFL  LAEKS+ V AEKKRKTV L+H+RIAVKRHQ   DFLLDSLPLP+QP      
Subjt:  EEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAK

Query:  DENRTRVVVDK---VAPEGTRRIDDFFRRPE-KTASA
            T+ V DK     P GTRRIDDFF + + KT SA
Subjt:  DENRTRVVVDK---VAPEGTRRIDDFFRRPE-KTASA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAAGAGGAACCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCT
GTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTCGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCAATCGATCGGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCAGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGAGAAGACAGCGTCCGCGGAGACCAACGAGACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAAGAGGAACCCGGAGAGGCTATCCGGCCGGAATTTCCGATGGGGCGAATAAAGAAGATAATGAAGCTGGACAAGGACATTGGTAAAGTGAATTCAGAAGCGCT
GTTTTTAGTCTCATGCGCCACTGAGCTTTTCCTCGAGCTTCTCGCTGAAAAATCTTCCGAAGTCGCCGCCGAGAAGAAACGGAAGACCGTGAAGCTTGAACACATCCGAA
TCGCCGTCAAAAGGCATCAATCGATCGGTGATTTTCTCCTCGATTCGCTTCCTCTTCCTTCTCAGCCGTCAGATGCTCCGGCGAAGGACGAGAATCGCACTCGCGTTGTC
GTTGATAAAGTGGCTCCTGAAGGAACCCGCCGAATCGATGATTTCTTTCGCCGGCCAGAGAAGACAGCGTCCGCGGAGACCAACGAGACATAG
Protein sequenceShow/hide protein sequence
MAEEEPGEAIRPEFPMGRIKKIMKLDKDIGKVNSEALFLVSCATELFLELLAEKSSEVAAEKKRKTVKLEHIRIAVKRHQSIGDFLLDSLPLPSQPSDAPAKDENRTRVV
VDKVAPEGTRRIDDFFRRPEKTASAETNET