; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G004600 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004600
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclp protease adapter protein ClpF, chloroplastic
Genome locationCmo_Chr05:2147355..2151462
RNA-Seq ExpressionCmoCh05G004600
SyntenyCmoCh05G004600
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009840 - chloroplastic endopeptidase Clp complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR001943 - UVR domain
IPR011722 - Hemimethylated DNA-binding domain
IPR036623 - Hemimethylated DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598627.1 Clp protease adapter protein ClpF, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]8.8e-18595.21Show/hide
Query:  FSSLLRRPQGRLSTSLAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLD
        FSS ++   GRLST LAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCR KRGNFKVKAGWLFRGGGQGLD
Subjt:  FSSLLRRPQGRLSTSLAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLD

Query:  ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQ
        ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQ
Subjt:  ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQ

Query:  ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE
        ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE
Subjt:  ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE

Query:  PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
Subjt:  PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

KAG7029563.1 Clp protease adapter protein ClpF, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-18595.21Show/hide
Query:  FSSLLRRPQGRLSTSLAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLD
        FSS ++   GRLST LAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCR KRGNFKVKAGWLFRGGGQGLD
Subjt:  FSSLLRRPQGRLSTSLAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLD

Query:  ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQ
        ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQ
Subjt:  ARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQ

Query:  ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE
        ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE
Subjt:  ISKLETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEE

Query:  PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
Subjt:  PDTERFDHPYNSFLFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

XP_022962595.1 clp protease adapter protein ClpF, chloroplastic [Cucurbita moschata]4.5e-18197.33Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
        ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV

Query:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
Subjt:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

XP_022997209.1 clp protease adapter protein ClpF, chloroplastic isoform X2 [Cucurbita maxima]5.0e-17293.18Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIH+LT+LGDPKVYGS LSWR+NFKQTS PTHLTSRQFFWHQRMRSFSLASQPCR KRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVE EVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
        ESAEY+FRLGQKT+HKIFGYRGVICGMDPVCCE+SSWMEIAQVEKLSRG NQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV

Query:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        D+AGDFIPV+QLREKYNRPRHEVPYD QDDDEQRGDD
Subjt:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

XP_023547352.1 clp protease adapter protein ClpF, chloroplastic [Cucurbita pepo subsp. pepo]7.5e-17694.66Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIHALTALGDPKVYGSTLSWRKNF QTSPPTHLTSRQFFWHQRMRSFSLASQPCR K+GNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
        ESAEYSFRLGQKT+HKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRG NQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV

Query:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        D+AGDFIPVKQLREKYNRPRHE+PYDPQDDDEQ+ DD
Subjt:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

TrEMBL top hitse value%identityAlignment
A0A1S3BCC1 uncharacterized protein LOC1034884819.3e-15685.59Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKN---FKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILI
        MVQDLSIHA+TALGDP VYGS LSWR+N   FKQTS  T LTSRQ FWHQ MRSFSL SQPCR KRG+FK++AGWLF+GGGQ    RIERSENANNDILI
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKN---FKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILI

Query:  FFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKV
        FFFQLDLATRVQYALNIEQYEIAQELR KLTEVE E+IKQQESK+GLTSKSEVQDK         DLQKAIESENY  AAQLRD+ISKLETESLAASAKV
Subjt:  FFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKV

Query:  LAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLF
        LAYESAEYSFRLGQK RHKIFGY GV+CGMDPVCCESSSWMEIAQVEKLSRG NQPFYQVLVDVRT+PDLLVAYVAEENLL PEEPDTERFDHPY+SFLF
Subjt:  LAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLF

Query:  YGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        YGVDSAGDFIP+KQLREKYNRPRHEVP+DPQ DDEQ+GDD
Subjt:  YGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

A0A5A7VGB7 UvrB/uvrC motif-containing protein isoform 11.2e-15585.29Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKN---FKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILI
        MVQDLSIHA+TALGDP VYGS LSWR+N   FKQTS  T LTSRQ FWHQ MRSFSL SQPCR KRG+FK++AGWLF+GGGQ    RIERSENANNDILI
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKN---FKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILI

Query:  FFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKV
        FFFQLDLATRVQYALNIEQYEIAQELR KLTEVE E+IKQQESK+GLTSKSEVQDK         DLQKAIESENY  AAQLRD+ISKLETESLAASAKV
Subjt:  FFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKV

Query:  LAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLF
        LAYESAEYSFRLGQK RHKIFGY GV+CGMDPVCCESSSWMEIAQVEKLSRG NQPFYQVLVDVRT+PDLLVAYVAEENLL PEEPDTERFDHPY+SFLF
Subjt:  LAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLF

Query:  YGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        YGVDSAGDFIP+KQLREKYNRPRHE+P+DPQ DDEQ+GDD
Subjt:  YGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

A0A6J1HFJ3 clp protease adapter protein ClpF, chloroplastic2.2e-18197.33Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
        ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV

Query:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
Subjt:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

A0A6J1KAU5 clp protease adapter protein ClpF, chloroplastic isoform X22.4e-17293.18Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIH+LT+LGDPKVYGS LSWR+NFKQTS PTHLTSRQFFWHQRMRSFSLASQPCR KRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVE EVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
        ESAEY+FRLGQKT+HKIFGYRGVICGMDPVCCE+SSWMEIAQVEKLSRG NQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGV

Query:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        D+AGDFIPV+QLREKYNRPRHEVPYD QDDDEQRGDD
Subjt:  DSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

A0A6J1KD74 clp protease adapter protein ClpF, chloroplastic isoform X17.8e-17192.63Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
        MVQDLSIH+LT+LGDPKVYGS LSWR+NFKQTS PTHLTSRQFFWHQRMRSFSLASQPCR KRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNFKVKAGWLFRGGGQGLDARIERSENANNDILIFFF

Query:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
        QLDLATRVQYALNIEQYEIAQELRTKLTEVE EVIKQQESKRGLTSKSEVQDK         DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY
Subjt:  QLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAY

Query:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDT--ERFDHPYNSFLFY
        ESAEY+FRLGQKT+HKIFGYRGVICGMDPVCCE+SSWMEIAQVEKLSRG NQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDT  ERFDHPYNSFLFY
Subjt:  ESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDT--ERFDHPYNSFLFY

Query:  GVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD
        GVD+AGDFIPV+QLREKYNRPRHEVPYD QDDDEQRGDD
Subjt:  GVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD

SwissProt top hitse value%identityAlignment
O94952 F-box only protein 212.8e-0832.73Show/hide
Query:  FRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDF
        + +G   +HK +GY  VI G DP C     W+    V  L  G +QPFY VLV+     D    Y A+ENL    EP  +   HP +   ++   +   +
Subjt:  FRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDF

Query:  IPVKQLREKY
        IP  +L  +Y
Subjt:  IPVKQLREKY

Q5R5S1 F-box only protein 212.8e-0832.73Show/hide
Query:  FRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDF
        + +G   +HK +GY  VI G DP C     W+    V  L  G +QPFY VLV+     D    Y A+ENL    EP  +   HP +   ++   +   +
Subjt:  FRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDF

Query:  IPVKQLREKY
        IP  +L  +Y
Subjt:  IPVKQLREKY

Q67Y99 Clp protease adapter protein ClpF, chloroplastic4.8e-10965.97Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSP--PTHLTSRQFFWHQRMRSFSLASQPCRLKRGN-FKVKAGWLFRGGG-QGLDARIERSENANNDIL
        MVQ  S+  LT  G  KV  S L  R N  + S        S QF      +S S  S    LK+ N  +V+A W F+GGG QGLD   ERSE+AN DIL
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSP--PTHLTSRQFFWHQRMRSFSLASQPCRLKRGN-FKVKAGWLFRGGG-QGLDARIERSENANNDIL

Query:  IFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAK
        IFFFQLDLATRVQYA+N+EQY+IAQ+LR KLTEVEEE I+ QE KRG ++KSE QDK         DLQ AI+SE+Y  AA+LRD+ISKLE ESLA SAK
Subjt:  IFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAK

Query:  VLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFL
         LA+E AEY+FRLGQK RHK FGYR V+CGMDP+C ESSSWME A+VEKL RG NQPFYQVLVDVRT+PDLLVAYVAE+NLL PE+PD ERFDHPY SFL
Subjt:  VLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFL

Query:  FYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDD
        +YG D+AGDFIPVKQLREKYNRPRHEVP+D QD+D
Subjt:  FYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDD

Q8VDH1 F-box only protein 214.8e-0830.23Show/hide
Query:  ESLAASAKVLAYES-AEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTER
        E +    K+ + E   +  + +G   +HK +GY  VI G DP C     W+    V  L  G +QPFY VLV+     D    Y A+ENL    EP  + 
Subjt:  ESLAASAKVLAYES-AEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTER

Query:  FDHPYNSFLFYGVDSAGDFIPVKQLREKY
          HP +   ++   +   +IP  +L  +Y
Subjt:  FDHPYNSFLFYGVDSAGDFIPVKQLREKY

Arabidopsis top hitse value%identityAlignment
AT2G03390.1 uvrB/uvrC motif-containing protein3.4e-11065.97Show/hide
Query:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSP--PTHLTSRQFFWHQRMRSFSLASQPCRLKRGN-FKVKAGWLFRGGG-QGLDARIERSENANNDIL
        MVQ  S+  LT  G  KV  S L  R N  + S        S QF      +S S  S    LK+ N  +V+A W F+GGG QGLD   ERSE+AN DIL
Subjt:  MVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSP--PTHLTSRQFFWHQRMRSFSLASQPCRLKRGN-FKVKAGWLFRGGG-QGLDARIERSENANNDIL

Query:  IFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAK
        IFFFQLDLATRVQYA+N+EQY+IAQ+LR KLTEVEEE I+ QE KRG ++KSE QDK         DLQ AI+SE+Y  AA+LRD+ISKLE ESLA SAK
Subjt:  IFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAK

Query:  VLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFL
         LA+E AEY+FRLGQK RHK FGYR V+CGMDP+C ESSSWME A+VEKL RG NQPFYQVLVDVRT+PDLLVAYVAE+NLL PE+PD ERFDHPY SFL
Subjt:  VLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFL

Query:  FYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDD
        +YG D+AGDFIPVKQLREKYNRPRHEVP+D QD+D
Subjt:  FYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDD

AT2G03390.2 uvrB/uvrC motif-containing protein1.6e-8874.09Show/hide
Query:  LNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAYESAEYSFRLGQ
        +N+EQY+IAQ+LR KLTEVEEE I+ QE KRG ++KSE QDK         DLQ AI+SE+Y  AA+LRD+ISKLE ESLA SAK LA+E AEY+FRLGQ
Subjt:  LNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDK---------DLQKAIESENYTFAAQLRDQISKLETESLAASAKVLAYESAEYSFRLGQ

Query:  KTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDFIPVKQ
        K RHK FGYR V+CGMDP+C ESSSWME A+VEKL RG NQPFYQVLVDVRT+PDLLVAYVAE+NLL PE+PD ERFDHPY SFL+YG D+AGDFIPVKQ
Subjt:  KTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSFLFYGVDSAGDFIPVKQ

Query:  LREKYNRPRHEVPYDPQDDD
        LREKYNRPRHEVP+D QD+D
Subjt:  LREKYNRPRHEVPYDPQDDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATAACGTCGGAACGAGGCCATTCCACTGGCTGAAACTCAATTTTCATCATTTGTGGTTGCAGAAAAATTGCTTCTCGTCGCTTCTCCGGCGGCCTCAGGGAAG
ACTATCTACCAGTTTAGCAGAAATGGTGCAGGATTTGTCAATACACGCTCTGACAGCCTTGGGAGATCCAAAGGTTTATGGATCAACTCTTTCATGGAGGAAGAATTTCA
AGCAGACAAGTCCTCCAACCCATTTAACTTCCAGGCAATTCTTTTGGCATCAACGCATGCGAAGCTTTTCCTTAGCTAGCCAACCCTGTAGATTGAAACGAGGAAATTTT
AAGGTTAAAGCTGGATGGTTGTTCAGAGGGGGTGGACAAGGGTTGGATGCTCGTATCGAGCGCAGTGAGAATGCTAACAATGATATTTTAATCTTCTTTTTCCAGCTGGA
CCTGGCAACACGAGTACAGTATGCATTGAACATTGAACAGTATGAAATTGCACAAGAATTGAGAACAAAGCTAACCGAGGTCGAAGAAGAAGTCATCAAGCAGCAAGAAT
CTAAAAGGGGGTTGACTTCAAAGAGCGAAGTTCAAGACAAAGATTTGCAGAAGGCTATTGAAAGTGAAAATTATACTTTTGCTGCACAGCTGCGGGATCAAATTTCCAAA
CTGGAAACTGAGTCCCTAGCTGCATCTGCTAAAGTTCTGGCTTACGAAAGTGCTGAATATAGTTTTCGATTGGGACAGAAAACAAGGCACAAAATTTTCGGATACCGAGG
TGTGATTTGTGGAATGGATCCTGTGTGTTGTGAATCAAGTTCCTGGATGGAGATAGCACAAGTTGAAAAATTATCTCGAGGTCCGAATCAGCCGTTCTATCAGGTTTTAG
TCGATGTTCGTACAAACCCGGATTTACTGGTTGCATATGTTGCTGAGGAAAATCTACTTGTTCCTGAAGAACCAGATACGGAGAGGTTTGATCATCCATATAATTCCTTC
TTATTCTATGGAGTGGATTCAGCTGGGGATTTCATTCCTGTAAAGCAACTGCGGGAGAAGTACAATCGACCTCGACACGAAGTTCCTTATGATCCTCAAGACGACGACGA
GCAACGAGGTGATGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATAACGTCGGAACGAGGCCATTCCACTGGCTGAAACTCAATTTTCATCATTTGTGGTTGCAGAAAAATTGCTTCTCGTCGCTTCTCCGGCGGCCTCAGGGAAG
ACTATCTACCAGTTTAGCAGAAATGGTGCAGGATTTGTCAATACACGCTCTGACAGCCTTGGGAGATCCAAAGGTTTATGGATCAACTCTTTCATGGAGGAAGAATTTCA
AGCAGACAAGTCCTCCAACCCATTTAACTTCCAGGCAATTCTTTTGGCATCAACGCATGCGAAGCTTTTCCTTAGCTAGCCAACCCTGTAGATTGAAACGAGGAAATTTT
AAGGTTAAAGCTGGATGGTTGTTCAGAGGGGGTGGACAAGGGTTGGATGCTCGTATCGAGCGCAGTGAGAATGCTAACAATGATATTTTAATCTTCTTTTTCCAGCTGGA
CCTGGCAACACGAGTACAGTATGCATTGAACATTGAACAGTATGAAATTGCACAAGAATTGAGAACAAAGCTAACCGAGGTCGAAGAAGAAGTCATCAAGCAGCAAGAAT
CTAAAAGGGGGTTGACTTCAAAGAGCGAAGTTCAAGACAAAGATTTGCAGAAGGCTATTGAAAGTGAAAATTATACTTTTGCTGCACAGCTGCGGGATCAAATTTCCAAA
CTGGAAACTGAGTCCCTAGCTGCATCTGCTAAAGTTCTGGCTTACGAAAGTGCTGAATATAGTTTTCGATTGGGACAGAAAACAAGGCACAAAATTTTCGGATACCGAGG
TGTGATTTGTGGAATGGATCCTGTGTGTTGTGAATCAAGTTCCTGGATGGAGATAGCACAAGTTGAAAAATTATCTCGAGGTCCGAATCAGCCGTTCTATCAGGTTTTAG
TCGATGTTCGTACAAACCCGGATTTACTGGTTGCATATGTTGCTGAGGAAAATCTACTTGTTCCTGAAGAACCAGATACGGAGAGGTTTGATCATCCATATAATTCCTTC
TTATTCTATGGAGTGGATTCAGCTGGGGATTTCATTCCTGTAAAGCAACTGCGGGAGAAGTACAATCGACCTCGACACGAAGTTCCTTATGATCCTCAAGACGACGACGA
GCAACGAGGTGATGATTGAGCGACACACATTTTTTGAAATCCATCATTCAACACCTTCAAAAAAATGGTTCGTTCATCTCTCATTTCTTCCGAGTCCTCCTTTAATTCTC
TCCTTGTGTGTTAAACTTTCCATATTCGTTGATTTTCTGGAGATTTGATGAACTTGATAGCTGAAAATTCTGAATAAGTATTGTACATGTCATATATATATACACACACA
CACACATAGCATCTCGTTATTTTCTTCTCTTTTCCTTGATACTGATTTTCAAGTGTTATACTTGACAACGAGATCGAGATCGATCAAGTTCTTCGCTCGATA
Protein sequenceShow/hide protein sequence
MSDNVGTRPFHWLKLNFHHLWLQKNCFSSLLRRPQGRLSTSLAEMVQDLSIHALTALGDPKVYGSTLSWRKNFKQTSPPTHLTSRQFFWHQRMRSFSLASQPCRLKRGNF
KVKAGWLFRGGGQGLDARIERSENANNDILIFFFQLDLATRVQYALNIEQYEIAQELRTKLTEVEEEVIKQQESKRGLTSKSEVQDKDLQKAIESENYTFAAQLRDQISK
LETESLAASAKVLAYESAEYSFRLGQKTRHKIFGYRGVICGMDPVCCESSSWMEIAQVEKLSRGPNQPFYQVLVDVRTNPDLLVAYVAEENLLVPEEPDTERFDHPYNSF
LFYGVDSAGDFIPVKQLREKYNRPRHEVPYDPQDDDEQRGDD