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CmoCh05G004730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein root UVB sensitive 3
Genome locationCmo_Chr05:2209491..2213288
RNA-Seq ExpressionCmoCh05G004730
SyntenyCmoCh05G004730
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR006968 - Root UVB sensitive family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598638.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.9e-5567.38Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERKSIICVIVRKDATANDIFQSFFHALV AYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

KAG7029574.1 Protein root UVB sensitive 3 [Cucurbita argyrosperma subsp. argyrosperma]2.9e-5567.38Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERKSIICVIVRKDATANDIFQSFFHALV AYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

XP_022962049.1 protein root UVB sensitive 3 [Cucurbita moschata]7.6e-5667.91Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

XP_022997148.1 protein root UVB sensitive 3 [Cucurbita maxima]1.6e-5366.31Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERK+II VIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

XP_023546684.1 protein root UVB sensitive 3 isoform X1 [Cucurbita pepo subsp. pepo]9.3e-5465.78Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIW+SFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERK+IICVIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFI K
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

TrEMBL top hitse value%identityAlignment
A0A1S3BCA3 protein root UVB sensitive 3 isoform X21.8e-4759.26Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+IQT QV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                    KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMDKHYE FI+K
Subjt:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

A0A1S3BDL5 protein root UVB sensitive 3 isoform X11.8e-4759.26Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+IQT QV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                    KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMDKHYE FI+K
Subjt:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

A0A5A7VCN7 Protein root UVB sensitive 3 isoform X11.8e-4759.26Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQH+IQT QV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                    KYLL+ER+  I VIV+KDATANDIFQSF HALV AYVPDQ SRHLES+SWMDKHYE FI+K
Subjt:  ----------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

A0A6J1HC09 protein root UVB sensitive 33.7e-5667.91Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

A0A6J1KD16 protein root UVB sensitive 37.7e-5466.31Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------
        MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ                                   
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQ-----------------------------------

Query:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
                                 VKYLLMERK+II VIVRKDATA+DIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK
Subjt:  -------------------------VKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRHLESLSWMDKHYEDFIQK

SwissProt top hitse value%identityAlignment
Q499P8 RUS family member 14.1e-0436.36Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV
        + G+ + +L+  +   C       F+ LT  H+YANY+AV  L L +LN  R  + L+HF+Q G+V
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV

Q5R8F6 RUS family member 14.9e-0537.88Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV
        +VG+ + +L+  +  GCP      F  LT  H+YANY+AV  L + +LN  R  + L+H++Q G+V
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV

Q84JB8 Protein root UVB sensitive 33.6e-2438.1Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HFIQTGQV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK
                                   KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+DKHY++ + K
Subjt:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK

Q91W34 RUS family member 12.9e-0537.88Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV
        + G+ + +L+  +   CP      F+ LT  H+YANY+AV  L L +LN  R  + L+HF+Q G+V
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV

Q96GQ5 RUS family member 11.4e-0436.36Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV
        + G+ + +L+  +  GCP      F  LT  H+YANY+AV  L + +LN  R  + L+H++Q G+V
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV

Arabidopsis top hitse value%identityAlignment
AT1G13770.1 Protein of unknown function, DUF6472.6e-2538.1Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HFIQTGQV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK
                                   KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+DKHY++ + K
Subjt:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK

AT1G13770.2 Protein of unknown function, DUF6472.6e-2538.1Show/hide
Query:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------
        M+GM++GMLLAR T G P+AIWLSFLSLT+FHMYANY+AV CL L SLN +R SI L HFIQTGQV                                  
Subjt:  MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQV----------------------------------

Query:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK
                                   KYLL   K  + VI+ KD+   D+ +S+ HA+V A + +++ S + E  +W+DKHY++ + K
Subjt:  ---------------------------KYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQA-SRHLESLSWMDKHYEDFIQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGCATGGCGATTGGTATGCTTCTTGCTCGTATTACCATGGGATGCCCACTGGCCATCTGGCTTTCTTTTCTATCTCTCACGTTGTTCCATATGTACGCAAATTA
CAAGGCTGTTTGCTGCCTTTCCTTGACTTCACTCAACCCTCAGAGGTGTTCAATTGCTTTGCAGCATTTTATTCAGACAGGCCAAGTGAAGTACCTTCTAATGGAGAGGA
AGTCCATTATCTGTGTTATTGTGCGAAAAGATGCAACTGCTAATGACATCTTCCAATCATTCTTTCATGCACTTGTTACGGCTTATGTTCCTGATCAGGCGTCTAGGCAT
TTGGAAAGCCTGTCGTGGATGGACAAACATTATGAAGATTTTATTCAAAAGTTTGTTGGAGAGCCAACTGGGTCTGCAGTCCCAGAGATGAGAAAATTGACTAAACCTCA
GTGGTCACTAACCATAAAAGAGCAGCACAAGGAGCTTGAAACGGACCGATATTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGCATGGCGATTGGTATGCTTCTTGCTCGTATTACCATGGGATGCCCACTGGCCATCTGGCTTTCTTTTCTATCTCTCACGTTGTTCCATATGTACGCAAATTA
CAAGGCTGTTTGCTGCCTTTCCTTGACTTCACTCAACCCTCAGAGGTGTTCAATTGCTTTGCAGCATTTTATTCAGACAGGCCAAGTGAAGTACCTTCTAATGGAGAGGA
AGTCCATTATCTGTGTTATTGTGCGAAAAGATGCAACTGCTAATGACATCTTCCAATCATTCTTTCATGCACTTGTTACGGCTTATGTTCCTGATCAGGCGTCTAGGCAT
TTGGAAAGCCTGTCGTGGATGGACAAACATTATGAAGATTTTATTCAAAAGTTTGTTGGAGAGCCAACTGGGTCTGCAGTCCCAGAGATGAGAAAATTGACTAAACCTCA
GTGGTCACTAACCATAAAAGAGCAGCACAAGGAGCTTGAAACGGACCGATATTGTTGA
Protein sequenceShow/hide protein sequence
MVGMAIGMLLARITMGCPLAIWLSFLSLTLFHMYANYKAVCCLSLTSLNPQRCSIALQHFIQTGQVKYLLMERKSIICVIVRKDATANDIFQSFFHALVTAYVPDQASRH
LESLSWMDKHYEDFIQKFVGEPTGSAVPEMRKLTKPQWSLTIKEQHKELETDRYC