CuGenDBv2

Gene ID	CmoCh05G004830
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	D-aminoacyl-tRNA deacylase-like
Genome location	Cmo_Chr05:2267496..2269539
RNA-Seq Expression	CmoCh05G004830
Synteny	CmoCh05G004830
Gene Ontology terms	GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process) GO:0051499 - D-aminoacyl-tRNA deacylase activity (molecular function)
InterPro domains	IPR007508 - D-aminoacyl-tRNA deacylase DtdA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0064782.1 D-aminoacyl-tRNA deacylase [Cucumis melo var. makuwa]

9.1e-26

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR+VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

XP_008445425.1 PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis melo]

9.1e-26

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR+VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

XP_011657410.1 D-aminoacyl-tRNA deacylase [Cucumis sativus]

1.6e-25

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

XP_022961727.1 D-aminoacyl-tRNA deacylase-like [Cucurbita moschata]

3.2e-39

100

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Query:  MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG
        MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG
Subjt:  MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG

XP_038886754.1 D-aminoacyl-tRNA deacylase isoform X2 [Benincasa hispida]

3.5e-25

42.22

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Query:  MATLVAATIV---SINPANELLACP---DGAPVL-LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTI---
        M TLV AT +   SINPANELLA P    G P+  + SFANR+VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATIV---SINPANELLACP---DGAPVL-LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTI---

Query:  ---------------------------------------------------PV-----------------------------------------------
                                                           PV                                               
Subjt:  ---------------------------------------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E  KNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGZ7 Uncharacterized protein

7.5e-26

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

A0A1S3BCQ0 D-aminoacyl-tRNA deacylase

4.4e-26

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR+VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

A0A5A7V8U9 D-aminoacyl-tRNA deacylase

4.4e-26

43.11

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Query:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----
        M TLV AT     SINPANELLA P  +P      + SFANR+VRLLQH RSIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATI---VSINPANELLACPDGAP----VLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG-----

Query:  -----------------------------TI--------------------PV-----------------------------------------------
                                     TI                    PV                                               
Subjt:  -----------------------------TI--------------------PV-----------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

A0A6J1BTK6 D-aminoacyl-tRNA deacylase isoform X2

3.7e-25

41.33

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Query:  MATLVAATIV---SINPANELLACPD--GAPVL--LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGT----
        M TLV AT +   SINPANELLA P     P L  + SFAN++VRLLQH +SIVVEDDLD RWEEL G VVDEVIFFSRHTAVSNRPALTVH IG     
Subjt:  MATLVAATIV---SINPANELLACPD--GAPVL--LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGT----

Query:  ---IPV----------------------------------------------------------------------------------------------
           +P+                                                                                              
Subjt:  ---IPV----------------------------------------------------------------------------------------------

Query:  EQNKNNKVLLGIEGGHYAPRHMDIV
        E NKNNKVLLGI GGHYAPRHMDIV
Subjt:  EQNKNNKVLLGIEGGHYAPRHMDIV

A0A6J1HAX2 D-aminoacyl-tRNA deacylase-like

1.6e-39

100

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Query:  MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG
        MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG
Subjt:  MATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIG

SwissProt top hits

e value

%identity

Alignment

Q9ZPQ3 D-aminoacyl-tRNA deacylase

3.4e-23

57.14

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Query:  MATLVAATI---VSINPANELLACP--DGAPVL---LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTIPV
        M TL+ AT     SINPA  LLA P     P+L   + SF+N++ R++QH RSIV EDDLD+RWEE  G VVDEVIF SRHTAVSNRPALTVH IG + +
Subjt:  MATLVAATI---VSINPANELLACP--DGAPVL---LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTIPV

Query:  EQNKN
        +  ++
Subjt:  EQNKN

Arabidopsis top hits

e value

%identity

Alignment

AT2G03800.1 D-aminoacyl-tRNA deacylases

2.4e-24

57.14

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Query:  MATLVAATI---VSINPANELLACP--DGAPVL---LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTIPV
        M TL+ AT     SINPA  LLA P     P+L   + SF+N++ R++QH RSIV EDDLD+RWEE  G VVDEVIF SRHTAVSNRPALTVH IG + +
Subjt:  MATLVAATI---VSINPANELLACP--DGAPVL---LSSFANREVRLLQHGRSIVVEDDLDIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTIPV

Query:  EQNKN
        +  ++
Subjt:  EQNKN

AT2G03800.1 D-aminoacyl-tRNA deacylases

3.0e-03

94.44

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Query:  KVLLGIEGGHYAPRHMDI
        KVLLGI GGHYAPRHMDI
Subjt:  KVLLGIEGGHYAPRHMDI

Sequences

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CDS sequence

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GTAACTGGACCCATCGCAGCGGTCTTGAGTGCCAAAGCGAATGCGAACCGTCGGAAACGCACCTGCAGAAGAATCTCAAGAATCTATTGGCTGAGGCGCCCTAGACATTC
GATTCAACAACCATCTCGCTCTGTTAAACCCTCAATTCACAGAAAGAGCAACAAAGAGGCAACCATGGCGACGTTAGTGGCGGCAACGATAGTTTCGATCAATCCTGCAA
ACGAGCTCCTCGCTTGCCCGGATGGCGCCCCGGTCCTTCTCTCCAGCTTCGCTAATCGAGAGGTGAGGCTGCTGCAACACGGTAGGAGCATTGTAGTTGAGGACGACCTA
GATATTCGTTGGGAGGAGCTTGCTGGCGTGGTCGTGGACGAGGTCATTTTCTTCAGCCGGCATACTGCCGTTTCGAATCGTCCTGCCCTCACTGTTCATCGGATTGGTAC
GATTCCAGTGGAACAGAATAAGAACAATAAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCATATGGACATAGTTCAGCTCTCGAAAGCTCATGTCTCGT
AG

mRNA sequence

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Protein sequence

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VTGPIAAVLSAKANANRRKRTCRRISRIYWLRRPRHSIQQPSRSVKPSIHRKSNKEATMATLVAATIVSINPANELLACPDGAPVLLSSFANREVRLLQHGRSIVVEDDL
DIRWEELAGVVVDEVIFFSRHTAVSNRPALTVHRIGTIPVEQNKNNKVLLGIEGGHYAPRHMDIVQLSKAHVS

CmoCh05G004830 (gene) of Cucurbita moschata (Rifu) v1 genome