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CmoCh05G004990 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G004990
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At1g19720-like
Genome locationCmo_Chr05:2402096..2402329
RNA-Seq ExpressionCmoCh05G004990
SyntenyCmoCh05G004990
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598662.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3398.7Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT
        MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA TDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT

KAG7029606.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-3297.37Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG
        MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA TDLIMRRQLHSYIIKSQLV SCDDLANVLSSNEFDGGVLLHG
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG

XP_022997077.1 pentatricopeptide repeat-containing protein At1g19720-like [Cucurbita maxima]1.2e-3092.21Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT
        MQPKMAVELFCQMLVEGIKPSSD+FSIL PALA TDLIMRRQLHSYIIKSQLVESCDDL+ VLSSNEFDGGV+LHGT
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT

XP_023546745.1 pentatricopeptide repeat-containing protein At1g19720-like [Cucurbita pepo subsp. pepo]4.0e-3194.81Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT
        MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA TDLI RRQLHSYIIKSQLV SC+DLANVLSSNEFDGGVLLHGT
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT

XP_038884429.1 pentatricopeptide repeat-containing protein At1g19720-like [Benincasa hispida]3.6e-2481.82Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG
        MQPKMAVELFCQMLVEG+KPSS TFSIL PALA   DL  RRQLHSYIIKS+ +ESC+DLANVLSS+ FDGGVLLHG
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG

TrEMBL top hitse value%identityAlignment
A0A0A0KFW8 Uncharacterized protein1.2e-2077.92Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG
        MQ KMAVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DLANVLSS+  D GVLLHG
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG

A0A1S3BDB0 pentatricopeptide repeat-containing protein At1g19720-like1.5e-2076.62Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG
        MQ ++AVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DLANVLSS+ FD GVLLHG
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG

A0A5A7VGH4 Pentatricopeptide repeat-containing protein1.5e-2076.62Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG
        MQ ++AVELFCQMLVEGIKPSS TFSIL PAL+   DL +RRQLHSYIIKSQ +ES +DLANVLSS+ FD GVLLHG
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALA-MTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHG

A0A6J1BQ73 pentatricopeptide repeat-containing protein At1g19720-like4.3e-1570.59Show/hide
Query:  QPKMAVELFCQMLVEGIKPSSDTFSILFPALAM-TDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEF
        QPK+A+ELFC+MLVEGIKPSS T SIL PAL +  DL +RRQLHSYI KSQL+E C+DLANV S  +F
Subjt:  QPKMAVELFCQMLVEGIKPSSDTFSILFPALAM-TDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEF

A0A6J1K3Z4 pentatricopeptide repeat-containing protein At1g19720-like5.6e-3192.21Show/hide
Query:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT
        MQPKMAVELFCQMLVEGIKPSSD+FSIL PALA TDLIMRRQLHSYIIKSQLVESCDDL+ VLSSNEFDGGV+LHGT
Subjt:  MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCCGAAAATGGCGGTTGAACTCTTCTGTCAAATGCTAGTAGAAGGCATAAAACCAAGTTCAGACACCTTTTCGATACTTTTCCCTGCCTTGGCTATGACA
GATTTGATAATGAGAAGACAGCTACATTCCTATATCATCAAGAGTCAACTTGTCGAATCGTGTGATGATCTCGCAAATGTCTTAAGTTCAAACGAGTTTGATGGA
GGAGTTCTGCTTCATGGAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCCGAAAATGGCGGTTGAACTCTTCTGTCAAATGCTAGTAGAAGGCATAAAACCAAGTTCAGACACCTTTTCGATACTTTTCCCTGCCTTGGCTATGACA
GATTTGATAATGAGAAGACAGCTACATTCCTATATCATCAAGAGTCAACTTGTCGAATCGTGTGATGATCTCGCAAATGTCTTAAGTTCAAACGAGTTTGATGGA
GGAGTTCTGCTTCATGGAACATAA
Protein sequenceShow/hide protein sequence
MQPKMAVELFCQMLVEGIKPSSDTFSILFPALAMTDLIMRRQLHSYIIKSQLVESCDDLANVLSSNEFDGGVLLHGT