; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G006520 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G006520
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAminoacyl-tRNA hydrolase
Genome locationCmo_Chr05:3291479..3292746
RNA-Seq ExpressionCmoCh05G006520
SyntenyCmoCh05G006520
Gene Ontology termsGO:0004045 - aminoacyl-tRNA hydrolase activity (molecular function)
InterPro domainsIPR002833 - Peptidyl-tRNA hydrolase, PTH2
IPR023476 - Peptidyl-tRNA hydrolase II domain superfamily
IPR042237 - Putative peptidyl-tRNA hydrolase PTRHD1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029746.1 putative peptidyl-tRNA hydrolase PTRHD1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-7892.31Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISAS FTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSS SMSESA SNSAPPPDD VEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT
        SVSA+WLNKDDPHT EYCSPHNIDSMHKVTLEVKGETQIVNLSEKL+A+SIAHKLWIEQPE+  +C AT
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT

XP_022962062.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita moschata]1.4e-98100Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

XP_022996792.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita maxima]1.8e-9395.74Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSS SMSESAESNSAPPPDD VEK ADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SVSA+WLNKDDP T EYCSPHNIDSMHKVTLEVKGETQIVNLSEKL+ NSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

XP_023546189.1 putative peptidyl-tRNA hydrolase PTRHD1 [Cucurbita pepo subsp. pepo]1.6e-9496.81Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISAS FTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSS SMSESAESNSAPPPDD VEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SVSAVWLNKDDPHT EYCSPHNIDSMHKVTLEVKGETQIVNLSEKL+A+SIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

XP_038884124.1 putative peptidyl-tRNA hydrolase PTRHD1 [Benincasa hispida]3.7e-8385.86Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG
        M  VISASRF FSISKST+LCSCS  RV PSSSLSLRS NRNSN FSS SMS+SAE+NS PPPDD     E+ ADVLIQYVVLRRDLIDSWPLGSVVTQG
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG

Query:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        CHASVSA+WLNKDDPHT +YCSPHNIDSMHKVTLEVKGETQIVNLSEKL+ANSI HKLWIEQPENIPTCLATKPYPKS+VS FFKKLKLCK
Subjt:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

TrEMBL top hitse value%identityAlignment
A0A0A0LLQ2 Aminoacyl-tRNA hydrolase1.3e-7680.21Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD----SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQ
        M  VISASRFT SISKS  LCSC RSRV+PSSSLSL S  R ++ F S SMS+S E+NS   PDD    + E  ADVLIQYVVLRRDLIDSWPLGSVVTQ
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD----SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQ

Query:  GCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        GCHASVSA+WLNKDDPHT +YC+PHNIDSMHKVTLEVKGETQ+VNLSEKL+ANSI HKLWIEQPENIPTCLATKPYPKSVVS FFKKLKLCK
Subjt:  GCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

A0A6J1GJ11 Aminoacyl-tRNA hydrolase4.5e-7480.1Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG
        M SVISASRFTFSIS S +L  C  +RVW  SS+ LRS N NS  FSS SMSES ESNS  P DD     E+ ADVL+QYVVLRRDLIDSWPLGSVVTQG
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG

Query:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        CHASVSA+WLNKDDPHT EYCSP NIDSMHKVTLEVKGETQIVNLSEKL+ANSI HKLW+EQPENIPTCLA+KPYPKSVVS FFKKLKLCK
Subjt:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

A0A6J1HBR1 Aminoacyl-tRNA hydrolase6.9e-99100Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

A0A6J1K304 Aminoacyl-tRNA hydrolase8.7e-9495.74Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSS SMSESAESNSAPPPDD VEK ADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SVSA+WLNKDDP T EYCSPHNIDSMHKVTLEVKGETQIVNLSEKL+ NSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

A0A6J1KJQ6 Aminoacyl-tRNA hydrolase1.2e-7480.63Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG
        M SVISASRFTFSIS S +L  CS +RVW  SS+ L S N NS  FSS SMSESAESNS  P DD     E+ ADVL+QYVVLRRDLIDSWPLGSVVTQG
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDD---SVEKTADVLIQYVVLRRDLIDSWPLGSVVTQG

Query:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        CHASVSA+WLNKDDPHT EYCSP NIDSMHKVTLEVKGETQIVNLSEKL+ANSI HKLW+EQPENIPTCLA+KPYPKSVVS FFKKLKLCK
Subjt:  CHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK

SwissProt top hitse value%identityAlignment
D3Z4S3 Putative peptidyl-tRNA hydrolase PTRHD15.7e-2647.9Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT
        +L+QY+VLR+DL     SWP G++V Q CHA+ +A+ L++D PHT  Y     +  M KV LE   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSVVSAFFKKLKLCK
        +PYPK  VS + KK +L K
Subjt:  KPYPKSVVSAFFKKLKLCK

Q3SZ85 Putative peptidyl-tRNA hydrolase PTRHD16.1e-2850.42Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT
        +L+QY+VLR+DL     SWP G+VV Q CHA+ +A+ L++D PHT  Y     ++ M KV LE   ET +  L+E L+  +I HKLW+EQPENIPTC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSVVSAFFKKLKLCK
        +PYPK  VS + KK +L K
Subjt:  KPYPKSVVSAFFKKLKLCK

Q6GMV3 Putative peptidyl-tRNA hydrolase PTRHD14.8e-2547.06Show/hide
Query:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT
        VL+QY+VLR+DL     SWP G++V Q CHA+ +A+  ++D PHT  Y     +  M KV LE   ET +  L+E L+  +I H LW+EQPENI TC+A 
Subjt:  VLIQYVVLRRDLID---SWPLGSVVTQGCHASVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLAT

Query:  KPYPKSVVSAFFKKLKLCK
        +PYPK  V  + KK +L K
Subjt:  KPYPKSVVSAFFKKLKLCK

Arabidopsis top hitse value%identityAlignment
AT5G10700.1 Peptidyl-tRNA hydrolase II (PTH2) family protein1.9e-5358.51Show/hide
Query:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA
        M + + ++ F F I          R R + S   ++R  +      +S SMS+      A     S EK  DV++QYVVLRRDLIDSWPLGSVVTQGCHA
Subjt:  MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHA

Query:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK
        SV+A+W  KDDP T +YC P +IDSMHKVTLEVKGETQ++NLSEKL+   I+HKLW+EQPENIPTC+ATKPYPKS VS+FFKKLKLCK
Subjt:  SVSAVWLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCTGTAATTTCAGCATCTCGATTCACTTTCTCCATTTCCAAATCCACGAAGCTCTGTTCGTGTTCGAGGTCTAGGGTTTGGCCCTCTTCTTCACTCAGT
CTCCGCTCTCGTAACCGAAATTCGAATCTGTTTAGCTCCGATTCTATGAGTGAATCCGCTGAAAGTAACTCCGCTCCTCCACCGGACGACAGCGTGGAGAAGACA
GCCGACGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATCTGATCGATTCGTGGCCTCTTGGAAGCGTCGTAACTCAGGGATGCCATGCTTCAGTCTCCGCTGTT
TGGTTGAACAAAGACGATCCCCACACTTTCGAGTACTGTAGTCCACACAATATCGATTCTATGCATAAGGTTACTCTTGAGGTGAAGGGAGAAACTCAGATCGTC
AACTTGTCGGAGAAACTTAGAGCAAATTCAATCGCCCACAAACTATGGATAGAACAACCAGAGAACATCCCAACATGTCTTGCAACAAAACCCTACCCCAAATCT
GTTGTATCAGCATTTTTTAAAAAACTGAAGCTCTGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCTGTAATTTCAGCATCTCGATTCACTTTCTCCATTTCCAAATCCACGAAGCTCTGTTCGTGTTCGAGGTCTAGGGTTTGGCCCTCTTCTTCACTCAGT
CTCCGCTCTCGTAACCGAAATTCGAATCTGTTTAGCTCCGATTCTATGAGTGAATCCGCTGAAAGTAACTCCGCTCCTCCACCGGACGACAGCGTGGAGAAGACA
GCCGACGTTTTGATTCAGTACGTGGTGCTCCGGAGAGATCTGATCGATTCGTGGCCTCTTGGAAGCGTCGTAACTCAGGGATGCCATGCTTCAGTCTCCGCTGTT
TGGTTGAACAAAGACGATCCCCACACTTTCGAGTACTGTAGTCCACACAATATCGATTCTATGCATAAGGTTACTCTTGAGGTGAAGGGAGAAACTCAGATCGTC
AACTTGTCGGAGAAACTTAGAGCAAATTCAATCGCCCACAAACTATGGATAGAACAACCAGAGAACATCCCAACATGTCTTGCAACAAAACCCTACCCCAAATCT
GTTGTATCAGCATTTTTTAAAAAACTGAAGCTCTGCAAGTGA
Protein sequenceShow/hide protein sequence
MISVISASRFTFSISKSTKLCSCSRSRVWPSSSLSLRSRNRNSNLFSSDSMSESAESNSAPPPDDSVEKTADVLIQYVVLRRDLIDSWPLGSVVTQGCHASVSAV
WLNKDDPHTFEYCSPHNIDSMHKVTLEVKGETQIVNLSEKLRANSIAHKLWIEQPENIPTCLATKPYPKSVVSAFFKKLKLCK