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CmoCh05G006770 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G006770
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationCmo_Chr05:3430942..3432484
RNA-Seq ExpressionCmoCh05G006770
SyntenyCmoCh05G006770
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014534.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1574.19Show/hide
Query:  GSSNFLVLHWYLWIQRSK--DTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GSSNFL+L WYLWIQRSK  DTIC SNR GNAI A+A Q MQ+ +VMIK P LGRDA LRAI
Subjt:  GSSNFLVLHWYLWIQRSK--DTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

KAG7029773.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-1495.45Show/hide
Query:  KRRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPNHSW
        +RRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHP HSW
Subjt:  KRRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPNHSW

PHT28657.1 50S ribosomal protein L14, chloroplastic [Capsicum baccatum]1.5e-0853.85Show/hide
Query:  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        RCTG+S+FLVL WY WI+  R            NAI  +  QGMQR +VMIK P L RD ALRAI
Subjt:  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

PLY89337.1 hypothetical protein LSAT_5X50421 [Lactuca sativa]2.4e-0654.69Show/hide
Query:  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        CTG+S FLVL  Y   +  R           GNAI A+  QGMQRA+VMIK PGLGRD  LRAI
Subjt:  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

XP_030483739.1 uncharacterized protein LOC115700311 [Cannabis sativa]1.8e-0668.89Show/hide
Query:  RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        + +DTIC SNR+ NAI     QGMQ+A+VMIK PGLGRDAALRAI
Subjt:  RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

TrEMBL top hitse value%identityAlignment
A0A2G2V6S4 50S ribosomal protein L14, chloroplastic7.1e-0953.85Show/hide
Query:  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        RCTG+S+FLVL WY WI+  R            NAI  +  QGMQR +VMIK P L RD ALRAI
Subjt:  RCTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

A0A2J6LPT2 S1-like domain-containing protein1.1e-0654.69Show/hide
Query:  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        CTG+S FLVL  Y   +  R           GNAI A+  QGMQRA+VMIK PGLGRD  LRAI
Subjt:  CTGSSNFLVLHWYLWIQ--RSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

A0A445DGR9 Uncharacterized protein1.5e-0653.97Show/hide
Query:  RCTGSSNFLVLHWYLWIQRSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        RCTGS NF+V                    GN I  +A QGMQRA+VMIK PGLGRDAALRAI
Subjt:  RCTGSSNFLVLHWYLWIQRSKDTICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

A0A4S8I6T0 Uncharacterized protein9.7e-0681.08Show/hide
Query:  NAIWAIAYQGMQRAKVMIKSPGLGRDAALRAIVEVVY
        NAI  +  QGMQRA+VMIK PGLGRDAALRAIVEVVY
Subjt:  NAIWAIAYQGMQRAKVMIKSPGLGRDAALRAIVEVVY

A0A6H0E8A1 Ribosomal protein S119.7e-0684.85Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAIW +A QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic1.1e-0681.82Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

B1A968 30S ribosomal protein S11, chloroplastic1.1e-0681.82Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

Q09ME4 30S ribosomal protein S11, chloroplastic3.8e-0784.85Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI A+A QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

Q2L937 30S ribosomal protein S11, chloroplastic1.1e-0681.82Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI A+  QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

Q9BBQ3 30S ribosomal protein S11, chloroplastic1.1e-0681.82Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI  +A QGMQRA+VMIK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI

Arabidopsis top hitse value%identityAlignment
ATCG00750.1 ribosomal protein S113.9e-0778.79Show/hide
Query:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI
        GNAI A+  QGMQRA+V IK PGLGRDAALRAI
Subjt:  GNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGC
AGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCA
ATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACT
ATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTT
AAGAGCTATCGTAGAAGTGGTATACTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAGCCCACCACCAAAGTGGGATTTTGGGCCCAGGCGAAATTGAAGCGAAGAAATTTTGAGTTCGGGCTTTCCATAGCAGAGTTGACTCTTGATGAGGAGTACGACTTAGC
AGTAGCTGCTGCATCAGTGGTGTTCTTAGCCAGATGGGTTCTGAATCACCCAAATCACTCATGGGTCCGTTTTCCTTTTCACTGTTCTCTTTTGTCTCTTTGGGCTCCCA
ATGGGACAATAATTCAATTAGACTATGGACATAACGAAGCAAGGTGTACGGGGTCGAGTAATTTCTTGGTCCTCCACTGGTACTTGTGGATTCAAAGGTCCAAGGACACT
ATTTGCTGCTCAAACCGCACAGGAAATGCTATTTGGGCAATAGCATATCAAGGTATGCAACGAGCAAAAGTCATGATAAAGAGCCCTGGTCTCGGAAGAGATGCAGCGTT
AAGAGCTATCGTAGAAGTGGTATACTCTTAA
Protein sequenceShow/hide protein sequence
KPTTKVGFWAQAKLKRRNFEFGLSIAELTLDEEYDLAVAAASVVFLARWVLNHPNHSWVRFPFHCSLLSLWAPNGTIIQLDYGHNEARCTGSSNFLVLHWYLWIQRSKDT
ICCSNRTGNAIWAIAYQGMQRAKVMIKSPGLGRDAALRAIVEVVYS