CuGenDBv2

Gene ID	CmoCh05G006940
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	sequence-specific DNA binding transcription factors;transcription regulators
Genome location	Cmo_Chr05:3553867..3554181
RNA-Seq Expression	CmoCh05G006940
Synteny	CmoCh05G006940
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR036638 - Helix-loop-helix DNA-binding domain superfamily IPR044549 - Transcription factor IBH1-like, bHLH domain IPR044660 - Transcription factor IBH1-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8651649.1 hypothetical protein Csa_021260, partial [Cucumis sativus]

2.9e-37

80.77

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Query:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTS
        MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK TSSS +SA    TTPS AMHKRLRNLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTS
Subjt:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTS

Query:  FYGL
        FYGL
Subjt:  FYGL

KAG6598843.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-46

99.05

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Query:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPK-TTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLT
        MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPK TTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLT
Subjt:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPK-TTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLT

Query:  SFYGL
        SFYGL
Subjt:  SFYGL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJ57 Uncharacterized protein

1.4e-37

80.77

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Query:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTS
        MRSIHSFR RRQAT+ + LKP+RRRR+KL+HLPK TSSS +SA    TTPS AMHKRLRNLQRLVPGH H+T+LNHLFQRTADYI ALQLKLNILKDLTS
Subjt:  MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTS

Query:  FYGL
        FYGL
Subjt:  FYGL

A0A7N0RGC2 Uncharacterized protein

9.3e-05

52.54

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Query:  TTPSPA--MHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL
        T PSPA  + +RLR LQR+VPG +H  D+  LF+RTADYI  L+ K+  L++L+S  GL
Subjt:  TTPSPA--MHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

A0A7N2L281 Uncharacterized protein

6.0e-04

39.76

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Query:  RRRRLKLVHLPKTTSSSAI-SAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL
        RRR +++    K    S + ++AA  TT    + ++LR LQ+++PG N + DL  LF R A+YI +LQ+K+NILK++++ YG+
Subjt:  RRRRLKLVHLPKTTSSSAI-SAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators

6.0e-04

32.89

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Query:  RRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDL
        RR+R +   + K       S  A+   P  A+H+R++ L+ LVP       L+ LF++TADYI AL++K+ +++ +
Subjt:  RRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDL

Sequences

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CDS sequence

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ATGAGGTCTATCCACTCATTCCGACAAAGAAGACAAGCCACCTCCACTGCCAATCTCAAACCCACAAGAAGGAGAAGGCTAAAGCTTGTTCACCTCCCAAAAACCACCTC
CTCCTCCGCCATCTCCGCCGCAGCCACCGGAACAACCCCCTCCCCCGCCATGCACAAACGGCTGAGAAATCTGCAGAGGCTGGTCCCCGGCCACAACCATGACACCGACC
TCAACCACTTGTTTCAAAGAACTGCAGATTACATCCAGGCTTTACAACTTAAGCTCAACATCCTCAAAGATCTCACCTCTTTCTATGGCCTTTGA

mRNA sequence

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Protein sequence

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MRSIHSFRQRRQATSTANLKPTRRRRLKLVHLPKTTSSSAISAAATGTTPSPAMHKRLRNLQRLVPGHNHDTDLNHLFQRTADYIQALQLKLNILKDLTSFYGL

CmoCh05G006940 (gene) of Cucurbita moschata (Rifu) v1 genome