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CmoCh05G007380 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G007380
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S acidic ribosomal protein P3
Genome locationCmo_Chr05:3878937..3880360
RNA-Seq ExpressionCmoCh05G007380
SyntenyCmoCh05G007380
Gene Ontology termsGO:0006414 - translational elongation (biological process)
GO:0022626 - cytosolic ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR044252 - 60S acidic ribosomal protein P3-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148320.1 60S acidic ribosomal protein P3-2 [Cucumis sativus]9.6e-4886.78Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP+SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

XP_008451467.1 PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]3.3e-4888.43Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TPTSAVFQVI+GG  GGGFI GGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

XP_022929782.1 60S acidic ribosomal protein P3-2-like [Cucurbita moschata]2.5e-56100Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDDDDLGFSLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

XP_023537756.1 60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo]2.4e-4384.3Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P+SAVFQVIIGG+SGGG I GG AAAAPAGG AP AAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
          KEEVKEESDDDDLGFSLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

XP_038889531.1 60S acidic ribosomal protein P3-2 [Benincasa hispida]1.1e-4888.52Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFI-GGGGAAAAPAGGDAPAAAEAP
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TPTSAVFQVI+GG  GGGFI GGGGAAAAPAGGDAPAAAEAP
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFI-GGGGAAAAPAGGDAPAAAEAP

Query:  AEKKEEVKEESDDDDLGFSLFD
        AEKKEEVKEESDD+DLG SLFD
Subjt:  AEKKEEVKEESDDDDLGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0LJB2 Uncharacterized protein4.6e-4886.78Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP+SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

A0A1S3BRK9 60S acidic ribosomal protein P3-21.6e-4888.43Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TPTSAVFQVI+GG  GGGFI GGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

A0A5D3BNN6 60S acidic ribosomal protein P3-21.6e-4888.43Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TPTSAVFQVI+GG  GGGFI GGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDD+DLG SLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

A0A6J1ENN1 60S acidic ribosomal protein P3-2-like1.2e-56100Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDDDDLGFSLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

A0A6J1KB28 60S acidic ribosomal protein P3-2-like1.2e-56100Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLFD
        EKKEEVKEESDDDDLGFSLFD
Subjt:  EKKEEVKEESDDDDLGFSLFD

SwissProt top hitse value%identityAlignment
O24413 60S acidic ribosomal protein P31.0e-2858.54Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFI--GGGGAAAAPAGGDAPAAAEA
        MGV+TF+CR++GG+WTA Q+SG++E SA + Y+LQR LV    + D   GVQSSFS VTP+SAVFQVI+G   GG  +  GGGG  AA +GG   AAAEA
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFI--GGGGAAAAPAGGDAPAAAEA

Query:  PAEKKEEVKEESDDDDLGFSLFD
        P E+K+E ++E  DDD+GFSLFD
Subjt:  PAEKKEEVKEESDDDDLGFSLFD

P52855 60S acidic ribosomal protein P15.2e-0463.79Show/hide
Query:  VFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD
        V  +I+   SGGG      AAAAPAGG A AAA A  EKKEE KEES DDD+GFSLFD
Subjt:  VFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD

P56724 60S acidic ribosomal protein P34.6e-2964.23Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAP-
        MGV+TF+CRSSG +WTA Q  G+LE SA + Y+LQR LV    + D + GVQSSFS V+P+SAVFQVIIG   GG  IGGG AA A +GG   AAAEAP 
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAP-

Query:  -AEKKEEVKEESDDDDLGFSLFD
          EKKEE KEES +DDLGFSLFD
Subjt:  -AEKKEEVKEESDDDDLGFSLFD

Q9LVC9 60S acidic ribosomal protein P3-22.0e-3265Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+PTSAVF V+IGG  GGGF  GGGAAA   GG   AAA    
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLF
        EKK+E  EE ++ D GF LF
Subjt:  EKKEEVKEESDDDDLGFSLF

Q9SVZ6 60S acidic ribosomal protein P3-11.6e-2960Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+PTSAVFQVI+GG  GGGF  GG A++    G+A AA +   
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLF
        +KKEE +EE  + D GF LF
Subjt:  EKKEEVKEESDDDDLGFSLF

Arabidopsis top hitse value%identityAlignment
AT4G25890.1 60S acidic ribosomal protein family1.1e-3060Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+PTSAVFQVI+GG  GGGF  GG A++    G+A AA +   
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLF
        +KKEE +EE  + D GF LF
Subjt:  EKKEEVKEESDDDDLGFSLF

AT5G57290.1 60S acidic ribosomal protein family1.4e-3365Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+PTSAVF V+IGG  GGGF  GGGAAA   GG   AAA    
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLF
        EKK+E  EE ++ D GF LF
Subjt:  EKKEEVKEESDDDDLGFSLF

AT5G57290.2 60S acidic ribosomal protein family1.5e-2771.95Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGG
        MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+PTSAVF V+IGG  GGGF  GGG
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGG

AT5G57290.3 60S acidic ribosomal protein family2.1e-3265Show/hide
Query:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA
        MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+PTSAVF V+IGG  GGGF  GGGAAA   GG   AAA    
Subjt:  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPA

Query:  EKKEEVKEESDDDDLGFSLF
        EKK+E  EE ++ D GF LF
Subjt:  EKKEEVKEESDDDDLGFSLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGAC
GCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTG
GCGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGT
GATGACGACGACCTTGGCTTTTCACTTTTTGATTAA
mRNA sequenceShow/hide mRNA sequence
TTTGACGAAGCCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCGTCTCTCGACATAAAAACCAAACACAATCCACTGAAGAGCCGTCCACTCCAACGCCCTCTTTGTTC
TTCTTCGTAATTCGCTTCAAGCAGAATCCAAGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCG
GGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGT
CACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGCGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTG
CTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTCGTTATTGTTTAT
CAAACTCAGAATCTTTAGCACTCAACTTTTATATTCAGCAAATTTTGGCTATGCATTTAGTTGAATTTTGCAAGTTCAATTGCTGTTCTTGTTAAGGACGTAAAATTTTG
TTACTGACCTTTGTCAAATGGTTGGGGTCTTCTTTTGGGCATTGTTTTTCAAAAGGAATACCAATTTGGTGTGGTTGGTTTTAGCACATCTATTATTTAACTTGAATGGT
GCCTTTTCAAGAATAGGTTGAG
Protein sequenceShow/hide protein sequence
MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEES
DDDDLGFSLFD