; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G007430 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G007430
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationCmo_Chr05:3907231..3911768
RNA-Seq ExpressionCmoCh05G007430
SyntenyCmoCh05G007430
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0048193 - Golgi vesicle transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0030008 - TRAPP complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]1.3e-7098.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQAEQTDRI+SKIGEEAAVGLKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]1.0e-6794Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQA+QTDR++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

XP_022929626.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita moschata]1.5e-71100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

XP_022996928.1 mediator of RNA polymerase II transcription subunit 22b-like isoform X1 [Cucurbita maxima]7.2e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQ AIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFN QAEQTDRI+SKIGEEAAVGLKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

XP_023545554.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]1.7e-7098Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQAEQTDR++SKIGEEAAVGLKELESHYYSSTQRTSQN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein5.0e-6894Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQA+QTDR++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X21.1e-6793.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQA+QT+R++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X11.1e-6793.33Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQA+QT+R++S+IGEEAA  LKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like7.5e-72100Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

A0A6J1K851 mediator of RNA polymerase II transcription subunit 22b-like isoform X13.5e-6996.67Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQ AIFSGFASLNDH
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT
        VEQRIVEFN QAEQTDRI+SKIGEEAAVGLKELESHYYSSTQRT QN LT
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 224.7e-1535.04Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSST
          +     E+ DR +  + +E ++ L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSST

Q54XB0 Putative mediator of RNA polymerase II transcription subunit 221.2e-1532.17Show/hide
Query:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH
        MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E + ME R S M+ A + LLK++ ELKQ  I + F+++ + 
Subjt:  MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDH

Query:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR
        V  + + F+++ E+T++ I  I EE +  LKELE  YY+S+ +
Subjt:  VEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR

Q62276 Mediator of RNA polymerase II transcription subunit 224.7e-1535.04Show/hide
Query:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR
        A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M +RA+ +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR
Subjt:  AAAAAAAQKQKLLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQR

Query:  IVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSST
          +     E+ DR +  + +E ++ L ELE  YYSS+
Subjt:  IVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b4.7e-5579.29Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR
        RI EF+Q+AE+T+R++++I ++A+  LKELESHYYSS QR
Subjt:  RIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a5.2e-5474.15Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+R++++I ++A+  LKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex3.3e-5679.29Show/hide
Query:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
        G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++MMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ
Subjt:  GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQ

Query:  RIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR
        RI EF+Q+AE+T+R++++I ++A+  LKELESHYYSS QR
Subjt:  RIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex3.7e-5574.15Show/hide
Query:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN
        MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++NSQE++MMEMRASR+VQAADSLLKLVSELKQTAIFSGFASLN
Subjt:  MNK--GIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLN

Query:  DHVEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTS
        DHVEQRI EF+Q+AE+T+R++++I ++A+  LKELESHYYSS QR++
Subjt:  DHVEQRIVEFNQQAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAGGCATTGGTGGTGGAACTGGCCCCACCGCAGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACAT
TGTCGACAATTTCACCCATCTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGG
CAGCTGATTCTCTGCTTAAGTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGATCACGTGGAGCAAAGAATCGTGGAATTCAATCAG
CAGGCGGAGCAGACCGACCGTATCATATCTAAAATTGGTGAAGAAGCTGCTGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAA
CAGGCTGACATGA
mRNA sequenceShow/hide mRNA sequence
CTTCCCCGACATTTCTACTTCTCTCTCTTTTCAATTACCTTGCCGCTATTGCAGAGCCGATTCAATTGCCATTTCCATTTTTATTATTATTATGAACAAAGGCATTGGTG
GTGGAACTGGCCCCACCGCAGCGGCTGCTGCGGCGGCAGCTCAGAAACAGAAACTGCTTCTTCAGAGAGTCGAAACCGATATAGCCAACATTGTCGACAATTTCACCCAT
CTTGTCAACGTCTCAAGGGTGAACGATCCACCTGTTAGGAATTCACAGGAATCTTTCATGATGGAAATGCGTGCGTCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAA
GTTGGTTTCAGAACTTAAGCAGACAGCAATCTTTTCTGGATTTGCTTCACTAAACGATCACGTGGAGCAAAGAATCGTGGAATTCAATCAGCAGGCGGAGCAGACCGACC
GTATCATATCTAAAATTGGTGAAGAAGCTGCTGTAGGGCTTAAGGAGCTTGAATCTCATTATTATTCTTCAACACAGAGGACTAGTCAGAACAGGCTGACATGATTTGTT
GTCTAGCAGCCATTCCAGCTGCATTGCCAGTTCAGTCTCCACCAATGGTTTCATCACTTAGCTCTGGTGGTCTTAGTGAGGGCAATCTCCATGTGCCCTAATCTTCTCCA
TCCTCGTCACGGTCGTCTGAAGGCCACCATGGCTGGAATTCTTATCAAAGGCATTAATAAAATGTGTTAATGTTGGGAAATTGAGATTGTGCAAAGCTCTAGGTAGATCT
TCTGTAACTTCTACCAATATTGTGATATGATGAAGAAGAGAATTTTTTGAGAGTGAATTTTTGGATTGACGGGATCAATCTCCAAGTATGAGCATGGTATGGTTAGATTG
TTAGATATAATTTTATTTATTCTCTTATTTAGTTTTTAAAATAGAATCCCATATGAACTATTTGAAGTCATATGTCATTCAACGGAG
Protein sequenceShow/hide protein sequence
MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQ
QAEQTDRIISKIGEEAAVGLKELESHYYSSTQRTSQNRLT