CuGenDBv2

Gene ID	CmoCh05G008180
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Protein Ycf2
Genome location	Cmo_Chr05:4911586..4912657
RNA-Seq Expression	CmoCh05G008180
Synteny	CmoCh05G008180
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0019253 - reductive pentose-phosphate cycle (biological process) GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QWV60883.1 hypothetical protein RF2 [Cucurbita ficifolia]

4.3e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

QWX87895.1 hypothetical chloroplast RF21 [Astragalus complanatus]

5.7e-22

77.92

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIRYALHKQTWDLRS+VR VQDHGIL Y +GRA       V+QN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

YP_009447494.1 Ycf2 [Cucurbita maxima]

4.3e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

YP_009447579.1 Ycf2 [Cucurbita moschata]

4.3e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

YP_009505123.1 Ycf2 [Cucurbita pepo]

4.3e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

TrEMBL top hits

e value

%identity

Alignment

A0A1D0C8A8 Protein Ycf2

2.7e-22

76.25

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLKGG
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       V+QN+LL  G
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLKGG

A0A1D0C8Y6 Protein Ycf2

2.7e-22

76.25

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLKGG
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       V+QN+LL  G
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLKGG

A0A2H4T233 Protein Ycf2

2.1e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

A0A2H4T2B6 Protein Ycf2

2.1e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

A0A344AXU5 Protein Ycf2

2.1e-22

80.52

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

SwissProt top hits

e value

%identity

Alignment

A4GYV4 Protein Ycf2

8.2e-24

77.92

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+ L
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Q09WV7 Protein Ycf2

8.2e-24

77.92

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI QKKSIIDTNIIR A H+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Q14F97 Protein Ycf2

8.2e-24

77.92

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+ L
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Q2QD30 Protein Ycf2

1.4e-23

76.62

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI Q+KSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       +AQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Q49KT6 Protein Ycf2

1.8e-23

76.62

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGSNVRDLVALTNE +SISI QKKSI+DTN IR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LL
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.4e-23

74.03

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+L+
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.4e-23

74.03

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL
        MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+L+
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCT
CTTCATAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTT
GTTGCACAAAATATACTTCTAAAGGGAGGTCGAAAATGCATCGTCAAGTATTGTACGTTTGACGTTATGGGTAATCGTCAACAAAAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLKGGRKCIVKYCTFDVMGNRQQK

CmoCh05G008180 (gene) of Cucurbita moschata (Rifu) v1 genome