CuGenDBv2

Gene ID	CmoCh05G008190
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Protein Ycf2
Genome location	Cmo_Chr05:4912660..4913625
RNA-Seq Expression	CmoCh05G008190
Synteny	CmoCh05G008190
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QWV60883.1 hypothetical protein RF2 [Cucurbita ficifolia]

8.7e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

QWX87895.1 hypothetical chloroplast RF21 [Astragalus complanatus]

1.1e-31

81.72

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIRYALHKQTWDLRS+VR VQDHGIL Y +GRA       V+QN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

YP_009447494.1 Ycf2 [Cucurbita maxima]

8.7e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

YP_009447579.1 Ycf2 [Cucurbita moschata]

8.7e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

YP_009505123.1 Ycf2 [Cucurbita pepo]

8.7e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

TrEMBL top hits

e value

%identity

Alignment

A0A2H4T233 Protein Ycf2

4.2e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

A0A2H4T2B6 Protein Ycf2

4.2e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

A0A344AXU5 Protein Ycf2

4.2e-32

83.87

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISIMQKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

A0A6M4E3M2 Protein Ycf2

1.2e-31

82.8

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIR ALHKQTWDLRSQVR VQDHGIL Y IGRA       V+QN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

A0A7T8E4R8 Ycf2

1.6e-31

78.95

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWD
        MGSNVRDLVALTNE +SISI QKKSI+DTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+ LSNC IDPISIYMKKKSW+
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWD

SwissProt top hits

e value

%identity

Alignment

Q09WV7 Protein Ycf2

1.7e-33

81.72

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISI QKKSIIDTNIIR A H+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

Q14F97 Protein Ycf2

6.3e-33

80.65

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISI QKKSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+ LSNC IDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

Q2PMM5 Protein Ycf2

2.2e-33

78.95

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWD
        MGSNVRDLVALTNE +SISI+QKKSIIDTNIIR  LH+QTWD RSQVR VQDHGIL Y IGRA       V+QN+LLSNCSIDPISIYMKKKS D
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWD

Q2QD30 Protein Ycf2

2.8e-33

80.65

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGSNVRDLVALTNE +SISI Q+KSIIDTNIIR ALH+QTWDLRSQVR VQDHGIL Y IGRA       +AQN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

Q9B1K6 Protein Ycf2

3.7e-33

79.57

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        +GSNV+DLVALTNE +SISI+QKKSIIDTN+IR ALHKQTWDLRSQVR VQDHGIL Y IGRA       V+QN+LLSNCSIDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-32

77.42

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+L+SNC IDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.1e-32

77.42

Show/hide

Query:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS
        MGS+ RDLVALTNE +SISI QKKSIIDTN IR ALH+QTWDLRSQVR VQDHGIL Y IGRA       VAQN+L+SNC IDPISIYMKKKS
Subjt:  MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTTCCAATGTACGAGATCTTGTAGCACTTACCAATGAGACCGTATCGATTAGTATTATGCAGAAGAAATCAATTATAGACACTAATATAATTAGATATGCTCTTCA
TAAACAAACTTGGGATTTGCGATCCCAGGTAAGATTGGTTCAGGATCATGGGATCCTTGTTTATCATATAGGAAGGGCTGTTTATCATATAGGAATGGTTGTTGCACAAA
ATATACTTCTAAGTAATTGCTCCATAGATCCTATATCTATCTATATGAAGAAGAAATCATGGGATTTCACTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGTTCCA
TAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGSNVRDLVALTNETVSISIMQKKSIIDTNIIRYALHKQTWDLRSQVRLVQDHGILVYHIGRAVYHIGMVVAQNILLSNCSIDPISIYMKKKSWDFTWKRKCSILMDSVP

CmoCh05G008190 (gene) of Cucurbita moschata (Rifu) v1 genome