CuGenDBv2

Gene ID	CmoCh05G008300
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	ATP synthase subunit alpha, chloroplastic
Genome location	Cmo_Chr05:5060593..5065528
RNA-Seq Expression	CmoCh05G008300
Synteny	CmoCh05G008300
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005524 - ATP binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0046961 - proton-transporting ATPase activity, rotational mechanism (molecular function)
InterPro domains	IPR000194 - ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain IPR000793 - ATP synthase, alpha subunit, C-terminal IPR020003 - ATPase, alpha/beta subunit, nucleotide-binding domain, active site IPR027417 - P-loop containing nucleoside triphosphate hydrolase IPR038376 - ATP synthase, alpha subunit, C-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ALO21904.1 AtpA [Cucurbita cordata]

1.3e-52

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

ALO22114.1 AtpA [Cucurbita ficifolia]

1.3e-52

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

KAG6496735.1 hypothetical protein ZIOFF_044605 [Zingiber officinale]

1.3e-52

86.76

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFN GI+P INVGISVSKVGSAAQIKAMKQ+A K KLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDK TQNQLARGQRLHELLKQSQS PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

XP_042401203.1 ATP synthase subunit alpha, chloroplastic-like, partial [Zingiber officinale]

1.3e-52

86.76

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFN GI+P INVGISVSKVGSAAQIKAMKQ+A K KLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDK TQNQLARGQRLHELLKQSQS PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

YP_009447435.1 ATP synthase CF1 alpha subunit [Cucurbita maxima]

1.3e-52

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IEU2 ATP synthase subunit alpha

6.2e-53

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A0A0S2IEV4 ATP synthase subunit alpha

6.2e-53

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A0A0S2IF17 ATP synthase subunit alpha

6.2e-53

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A0A0S2IHQ9 ATP synthase subunit alpha

6.2e-53

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A0A2H4T1V9 ATP synthase subunit alpha, chloroplastic

6.2e-53

88.24

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQIA KSKLELAQFVELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

SwissProt top hits

e value

%identity

Alignment

A0ZZ20 ATP synthase subunit alpha, chloroplastic

4.2e-54

86.03

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A KSKLELAQF ELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL     I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A6MM21 ATP synthase subunit alpha, chloroplastic

2.4e-54

86.03

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A KSKLELAQF ELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

A6MMJ2 ATP synthase subunit alpha, chloroplastic

3.2e-54

86.03

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A KSKLELAQF ELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

Q0G9N4 ATP synthase subunit alpha, chloroplastic

2.4e-54

86.03

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A KSKLELAQF ELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

Q2L8Z1 ATP synthase subunit alpha, chloroplastic

4.2e-54

86.03

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   KSSS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A KSKLELAQF ELEAFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        A DLDKATQNQLARGQRL ELLKQSQS+PL     I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

Arabidopsis top hits

e value

%identity

Alignment

AT2G07698.1 ATPase, F1 complex, alpha subunit protein

1.5e-38

64.71

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   K S   G GS+TALP++ETQ+GDVSAYIPTNVISITDGQI L  +LF  GI+PAINVG+SVS+VGSAAQ+KAMKQ+   SKLELAQ+ E+ AFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
          DLD ATQ  L RG RL E+ KQ Q +PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

ATCG00120.1 ATP synthase subunit alpha

2.1e-53

83.09

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   K SS LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFL ADLFN GI+PAINVGISVS+VGSAAQIKAMKQ+A K KLELAQF ELEAF+QF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
        + DLDKATQNQLARGQRL ELLKQSQS+PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

ATMG01190.1 ATP synthase subunit 1

1.5e-38

64.71

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Query:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF
        E   K S   G GS+TALP++ETQ+GDVSAYIPTNVISITDGQI L  +LF  GI+PAINVG+SVS+VGSAAQ+KAMKQ+   SKLELAQ+ E+ AFAQF
Subjt:  EIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLELAQFVELEAFAQF

Query:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI
          DLD ATQ  L RG RL E+ KQ Q +PL  +  I
Subjt:  AYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAAATTTTCATGGATTGCTCAACAACGAACACCCAAGAAGACCGCCCGGCCGTTAAGCTTATTCGGGAGATAGGCACTAAATCAAGTTCTGCTTTAGGTGAAGGAAG
TATGACTGCTTTACCAATAGTTGAGACTCAGTCGGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACCGATGGACAAATATTCTTATTTGCGGATCTAT
TCAATGTTGGAATCAAACCTGCTATTAATGTGGGTATTTCCGTCTCCAAAGTAGGATCTGCAGCTCAAATTAAAGCCATGAAACAAATAGCCAACAAATCAAAATTGGAA
TTGGCTCAATTTGTCGAATTAGAAGCCTTTGCGCAATTCGCTTATGATCTCGATAAAGCTACTCAGAATCAATTGGCAAGAGGTCAACGATTACATGAGTTGCTCAAACA
ATCTCAATCATCCCCTCTCATGGCTAAATCAAATATACCTCAACTTGAATTCATGTCCTTTCTTGAGACGCTTCCACTTTGTGGAATTTGGCTTCTGATCACCTCCTTGA
TGACCATTCACCTTCTTGCTCAAATGGCAATTCCAATAGTTCTTGATGTCGTTTGCTGTTCTTCCCGGTAA

mRNA sequence

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Protein sequence

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MKIFMDCSTTNTQEDRPAVKLIREIGTKSSSALGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLFADLFNVGIKPAINVGISVSKVGSAAQIKAMKQIANKSKLE
LAQFVELEAFAQFAYDLDKATQNQLARGQRLHELLKQSQSSPLMAKSNIPQLEFMSFLETLPLCGIWLLITSLMTIHLLAQMAIPIVLDVVCCSSR

CmoCh05G008300 (gene) of Cucurbita moschata (Rifu) v1 genome