; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G008310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCmo_Chr05:5061821..5062650
RNA-Seq ExpressionCmoCh05G008310
SyntenyCmoCh05G008310
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07646.1 Toll-Interleukin-Resistance domain family protein [Prunus dulcis]9.3e-2129.66Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKD-----------
        M+VARG KS TLY   G    + +A      ++WH RLGHMS KGMK++ + G L GL+SV++   E+C+  KQKRVSF  + R  KK+           
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKD-----------

Query:  -------TGTT---------KQVGVEVE-LQNNSHNDVVVDTQETPKTVAEKPEVKQVG-----VEVELLKDSHSDVVADTQKTYETLV-------EKPE
                G T          + G++++ L+ ++    + D +   + ++++ ++K +G     + +++ +D H  ++  ++  Y   V       +   
Subjt:  -------TGTT---------KQVGVEVE-LQNNSHNDVVVDTQETPKTVAEKPEVKQVG-----VEVELLKDSHSDVVADTQKTYETLV-------EKPE

Query:  YHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS
          +  + H+ L  D+  +   + DL               M +LQK V LS+ EAEYVA+ E  KEMIW+   L ELG KQ + +L  DS
Subjt:  YHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS

KAF3643966.1 Pleiotropic drug resistance protein 1 [Capsicum annuum]6.4e-2268.18Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK
        MVVARGTKS TL+T   C+N  VVAE AS+  +WHNRLGHMS K MKMLAA G LEG+K VDM   E+CVM KQKRVSFTKT +  KK
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK

KAF3659213.1 putative disease resistance RPP13-like protein 3-like isoform X1 [Capsicum annuum]6.6e-1928.02Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKR------------------------
        MVVARGT+  TLYT  GC+N VVVAE A +S +WHNRLGH+S KGMKMLAA   LEG+KSVDM   E+CVM KQKR                        
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKR------------------------

Query:  --------------------------------VSFTKTTRELKKDTGTTKQVGVEVELQNNS--------------------------------------
                                        +   +T  E  +  G T+++ + +  +  S                                      
Subjt:  --------------------------------VSFTKTTRELKKDTGTTKQVGVEVELQNNS--------------------------------------

Query:  --------------------------------------------------------------HNDVVVDTQETPKTVAEKPE--VKQVGVEVELLKDSHS
                                                                      H DV+ D     +   +K +   KQVGVE+EL K +  
Subjt:  --------------------------------------------------------------HNDVVVDTQETPKTVAEKPE--VKQVGVEVELLKDSHS

Query:  DVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQK
        DV A+TQ+T ET+VE+PE    +    W       R+ + E LQ+ED+ KWEQAMDD M  L+K
Subjt:  DVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQK

MUG03565.1 DDE-type integrase/transposase/recombinase [Bacillus tequilensis]1.2e-2575Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK
        MVVARGTKS TLYT  GC+N   VAE AS S +WHNRLGHMS KGMKML A G LEGLKSVDM   E+CVM KQKRVSFTKT RE KK
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK

PHU15676.1 hypothetical protein BC332_16881 [Capsicum chinense]1.2e-2068.18Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK
        MVVARGTK  TLYT  GC+N  VVAE AS S +WHNRLGHMS K MKML A   LEG+K VDM   E+ VM KQKRVSFTKT R  KK
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK

TrEMBL top hitse value%identityAlignment
A0A2G3B8H5 IAA-amino acid hydrolase ILR1-like 11.3e-1555.17Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELK
        MVVAR TKS TLYT  GC+N   +AE A  S +WHNRLG MS KGMKMLAA G LEGLKS+DM  Y      + K     +T+ ++K
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELK

A0A2G3CAD5 Uncharacterized protein5.9e-2168.18Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK
        MVVARGTK  TLYT  GC+N  VVAE AS S +WHNRLGHMS K MKML A   LEG+K VDM   E+ VM KQKRVSFTKT R  KK
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK

A0A438CET9 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-1631.68Show/hide
Query:  VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVE
        V+A G K+ TLY      + +VV ++++++S+WH+RLGHMS KGMKML + G L  LKS+D    E+C++ KQK+VSF KT R    +    K   V  +
Subjt:  VVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVE

Query:  LQNNS-----HNDVVVDTQETPKTVAEKPEVKQVGVEVELL-KDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQ
        L   S         +       K ++++  +K +G   ++L      D V  T K  +    K         H   V  +   +P            WE 
Subjt:  LQNNS-----HNDVVVDTQETPKTVAEKPEVKQVGVEVELL-KDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQ

Query:  AMDDGMF-------RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS
           D  F       +       +  EAEY+A  E  KEMIW+  +L+ELGKKQ   IL  DS
Subjt:  AMDDGMF-------RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS

A0A484MUU4 gag_pre-integrs domain-containing protein1.0e-1769.44Show/hide
Query:  GCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK
        GC+N    A+  S+SS+WH+RLGHMSVKGM+MLAA G LEGL SVDM   E+CVM KQKRVSFTKT RE KK
Subjt:  GCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKK

A0A4Y1RV75 Toll-Interleukin-Resistance domain family protein4.5e-2129.66Show/hide
Query:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKD-----------
        M+VARG KS TLY   G    + +A      ++WH RLGHMS KGMK++ + G L GL+SV++   E+C+  KQKRVSF  + R  KK+           
Subjt:  MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKD-----------

Query:  -------TGTT---------KQVGVEVE-LQNNSHNDVVVDTQETPKTVAEKPEVKQVG-----VEVELLKDSHSDVVADTQKTYETLV-------EKPE
                G T          + G++++ L+ ++    + D +   + ++++ ++K +G     + +++ +D H  ++  ++  Y   V       +   
Subjt:  -------TGTT---------KQVGVEVE-LQNNSHNDVVVDTQETPKTVAEKPEVKQVG-----VEVELLKDSHSDVVADTQKTYETLV-------EKPE

Query:  YHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS
          +  + H+ L  D+  +   + DL               M +LQK V LS+ EAEYVA+ E  KEMIW+   L ELG KQ + +L  DS
Subjt:  YHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-0858.33Show/hide
Query:  RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS
        +LQKCVALS+ EAEY+A  E GKEMIW+  +L+ELG  Q+E ++  DS
Subjt:  RLQKCVALSSVEAEYVAIAEDGKEMIWMTDYLEELGKKQREKILQIDS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-0633.71Show/hide
Query:  MVVARGTKSRTLYTAGG--CMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSF-TKTTREL
        +V+A+G    TLY      C   +  A+   +  +WH R+GHMS KG+++LA   ++   K   +   + C+  KQ RVSF T + R+L
Subjt:  MVVARGTKSRTLYTAGG--CMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSF-TKTTREL

P93293 Uncharacterized mitochondrial protein AtMg003001.6e-0432.1Show/hide
Query:  VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFT
        + +G +  +LY   G +      +AE+A + + +WH+RL HMS +GM++L   G L+  K   +   E+C+  K  RV+F+
Subjt:  VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFT

Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein1.2e-0532.1Show/hide
Query:  VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFT
        + +G +  +LY   G +      +AE+A + + +WH+RL HMS +GM++L   G L+  K   +   E+C+  K  RV+F+
Subjt:  VARGTKSRTLYTAGGCM--NRVVVAESASNSS-IWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAG
ACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAAC
AAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTT
GTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGA
TACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGG
ACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATA
GCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTAGCACGTGGCACAAAATCTAGAACTTTATACACTGCTGGAGGGTGTATGAACAGAGTTGTTGTTGCTGAGAGTGCTTCAAATTCAAGTATATGGCACAATAG
ACTTGGACATATGAGCGTTAAAGGAATGAAGATGTTGGCTGCGGGAGGAGTTTTAGAAGGTCTGAAATCTGTTGATATGAGTTCTTATGAGAACTGCGTTATGAGCAAAC
AAAAGCGAGTTAGCTTCACAAAGACTACCAGAGAATTGAAGAAAGATACCGGGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAACAATTCACATAATGATGTT
GTAGTGGATACTCAAGAAACTCCTAAGACTGTTGCTGAGAAACCAGAGGTGAAGCAAGTGGGAGTTGAGGTTGAGTTGCTGAAAGATTCACATAGTGATGTTGTAGCAGA
TACTCAAAAAACTTATGAGACTCTTGTTGAGAAACCAGAGTATCATTCAGAGTCTTCTTTACACTATTGGTTGGTGACTGATGAAGTGGAACGAAAGCCCCTTGATGAGG
ACCTACAGTTGGAGGATACAACTAAGTGGGAGCAAGCCATGGATGATGGAATGTTTAGGCTTCAGAAATGTGTTGCTCTTTCATCTGTTGAGGCTGAGTACGTGGCAATA
GCTGAAGATGGAAAGGAGATGATATGGATGACGGACTATCTAGAAGAATTAGGCAAGAAGCAGCGTGAAAAGATTCTTCAGATAGATAGTTAA
Protein sequenceShow/hide protein sequence
MVVARGTKSRTLYTAGGCMNRVVVAESASNSSIWHNRLGHMSVKGMKMLAAGGVLEGLKSVDMSSYENCVMSKQKRVSFTKTTRELKKDTGTTKQVGVEVELQNNSHNDV
VVDTQETPKTVAEKPEVKQVGVEVELLKDSHSDVVADTQKTYETLVEKPEYHSESSLHYWLVTDEVERKPLDEDLQLEDTTKWEQAMDDGMFRLQKCVALSSVEAEYVAI
AEDGKEMIWMTDYLEELGKKQREKILQIDS