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CmoCh05G008360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCHC-type domain-containing protein
Genome locationCmo_Chr05:5166050..5168524
RNA-Seq ExpressionCmoCh05G008360
SyntenyCmoCh05G008360
Gene Ontology termsNA
InterPro domainsIPR025314 - Domain of unknown function DUF4219


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8702390.1 hypothetical protein F3Y22_tig00110483pilonHSYRG00411 [Hibiscus syriacus]4.8e-2643.4Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEP------------------KDTTDCDK----------------------STKSKW-----
        MANM GQM LPRLTK NYENWSIQMKALLGSQDAWEVVEE                   K+    DK                      ++K  W     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEP------------------KDTTDCDK----------------------STKSKW-----

Query:  ----------------------------------------------RN---VTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQR
                                                      RN   +T   VVEKILRSLT+NF+NVVCAIEES DL   T +EL GSLEAHEQR
Subjt:  ----------------------------------------------RN---VTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQR

Query:  KKKK--ETLDQALQTKASIKDEKL-GSEKFKERSR
        KKKK  ETL+QALQTKA IKDEK+  S+ F+ + R
Subjt:  KKKK--ETLDQALQTKASIKDEKL-GSEKFKERSR

KYP44044.1 hypothetical protein KK1_034467 [Cajanus cajan]3.7e-2650.25Show/hide
Query:  MANMMGQMSLPRLTKT-NYENWSIQMKALLGSQDAWEVV----EEPKDTT-------DCDKSTKSK--------WRNVTRDG------------------
        MA++   + LPRLTK  NY+NWSIQMKALLGSQDAWEVV    EEPK+T           K T+SK        +R V   G                  
Subjt:  MANMMGQMSLPRLTKT-NYENWSIQMKALLGSQDAWEVV----EEPKDTT-------DCDKSTKSK--------WRNVTRDG------------------

Query:  ------------------VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKE--TLDQALQTKASIKDEK-LGSEKFKERSR
                          VVEKILRSLTN+FKNV+CAIEES DLT  T +ELA SLEAHEQRKKKKE   L+QALQ KASIKDEK L S+  + R R
Subjt:  ------------------VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKE--TLDQALQTKASIKDEK-LGSEKFKERSR

XP_022936199.1 uncharacterized protein LOC111442874 [Cucurbita moschata]7.4e-2753.45Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDC----DKSTK-------------------SKWRNVT------RDG-----
        MANMMGQM LPRLTKTNYENWSIQMKALL SQDAWEVVE    EPKD T      +KS K                   S +  +T      R+G     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDC----DKSTK-------------------SKWRNVT------RDG-----

Query:  --VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQ------------RKKKKETLDQALQTKAS
          VVEKILRSLT NF+NVVCAIEES DL KFT DELAGSLEAHEQ            ++K +ET++ AL    S
Subjt:  --VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQ------------RKKKKETLDQALQTKAS

XP_022954462.1 uncharacterized protein LOC111456728 [Cucurbita moschata]6.2e-3458.33Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTT-------------------------------DCDKSTKSKWRNVTRDG---
        MANMMGQM LPRLTKTNYENWSIQMKALLGSQDAWEVVE    EPKDTT                                 +K  K     + R+G   
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTT-------------------------------DCDKSTKSKWRNVTRDG---

Query:  ----VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKK-ETLDQALQTKASIKD
            VVEKILRSLT+NF+NV+C IEES ++TKF  DELAGSLEAHEQRKKKK ETLDQALQTK  I +
Subjt:  ----VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKK-ETLDQALQTKASIKD

XP_022975262.1 uncharacterized protein LOC111474389 [Cucurbita maxima]7.1e-3046.32Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVV----EEPKDTT--------------DCDK----------------------STKSKW-----
        M NMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEV+    EEPKDTT                DK                      ++K  W     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVV----EEPKDTT--------------DCDK----------------------STKSKW-----

Query:  ---RNVTRDG-------VVEKILRSLTNNFKN-VVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIKDEKL-----------GSEKF
             + R G       +VEKILRSLT N +N VVC IEES DL  FT DE+  SLEAHEQ KKKKE LD+ALQTKASI DEK+           GS + 
Subjt:  ---RNVTRDG-------VVEKILRSLTNNFKN-VVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIKDEKL-----------GSEKF

Query:  KERSRNTLHEDVNNLVQRRRREILGWRRGQC
           S+   +E+  N  ++R      WR   C
Subjt:  KERSRNTLHEDVNNLVQRRRREILGWRRGQC

TrEMBL top hitse value%identityAlignment
A0A151RNB3 CCHC-type domain-containing protein1.8e-2650.25Show/hide
Query:  MANMMGQMSLPRLTKT-NYENWSIQMKALLGSQDAWEVV----EEPKDTT-------DCDKSTKSK--------WRNVTRDG------------------
        MA++   + LPRLTK  NY+NWSIQMKALLGSQDAWEVV    EEPK+T           K T+SK        +R V   G                  
Subjt:  MANMMGQMSLPRLTKT-NYENWSIQMKALLGSQDAWEVV----EEPKDTT-------DCDKSTKSK--------WRNVTRDG------------------

Query:  ------------------VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKE--TLDQALQTKASIKDEK-LGSEKFKERSR
                          VVEKILRSLTN+FKNV+CAIEES DLT  T +ELA SLEAHEQRKKKKE   L+QALQ KASIKDEK L S+  + R R
Subjt:  ------------------VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKE--TLDQALQTKASIKDEK-LGSEKFKERSR

A0A6A3AD07 Uncharacterized protein2.3e-2643.4Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEP------------------KDTTDCDK----------------------STKSKW-----
        MANM GQM LPRLTK NYENWSIQMKALLGSQDAWEVVEE                   K+    DK                      ++K  W     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEP------------------KDTTDCDK----------------------STKSKW-----

Query:  ----------------------------------------------RN---VTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQR
                                                      RN   +T   VVEKILRSLT+NF+NVVCAIEES DL   T +EL GSLEAHEQR
Subjt:  ----------------------------------------------RN---VTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQR

Query:  KKKK--ETLDQALQTKASIKDEKL-GSEKFKERSR
        KKKK  ETL+QALQTKA IKDEK+  S+ F+ + R
Subjt:  KKKK--ETLDQALQTKASIKDEKL-GSEKFKERSR

A0A6J1F7M5 uncharacterized protein LOC1114428743.6e-2753.45Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDC----DKSTK-------------------SKWRNVT------RDG-----
        MANMMGQM LPRLTKTNYENWSIQMKALL SQDAWEVVE    EPKD T      +KS K                   S +  +T      R+G     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDC----DKSTK-------------------SKWRNVT------RDG-----

Query:  --VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQ------------RKKKKETLDQALQTKAS
          VVEKILRSLT NF+NVVCAIEES DL KFT DELAGSLEAHEQ            ++K +ET++ AL    S
Subjt:  --VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQ------------RKKKKETLDQALQTKAS

A0A6J1GR21 uncharacterized protein LOC1114567283.0e-3458.33Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTT-------------------------------DCDKSTKSKWRNVTRDG---
        MANMMGQM LPRLTKTNYENWSIQMKALLGSQDAWEVVE    EPKDTT                                 +K  K     + R+G   
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTT-------------------------------DCDKSTKSKWRNVTRDG---

Query:  ----VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKK-ETLDQALQTKASIKD
            VVEKILRSLT+NF+NV+C IEES ++TKF  DELAGSLEAHEQRKKKK ETLDQALQTK  I +
Subjt:  ----VVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKK-ETLDQALQTKASIKD

A0A6J1ICK8 uncharacterized protein LOC1114743893.5e-3046.32Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVV----EEPKDTT--------------DCDK----------------------STKSKW-----
        M NMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEV+    EEPKDTT                DK                      ++K  W     
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVV----EEPKDTT--------------DCDK----------------------STKSKW-----

Query:  ---RNVTRDG-------VVEKILRSLTNNFKN-VVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIKDEKL-----------GSEKF
             + R G       +VEKILRSLT N +N VVC IEES DL  FT DE+  SLEAHEQ KKKKE LD+ALQTKASI DEK+           GS + 
Subjt:  ---RNVTRDG-------VVEKILRSLTNNFKN-VVCAIEESNDLTKFTDDELAGSLEAHEQRKKKKETLDQALQTKASIKDEKL-----------GSEKF

Query:  KERSRNTLHEDVNNLVQRRRREILGWRRGQC
           S+   +E+  N  ++R      WR   C
Subjt:  KERSRNTLHEDVNNLVQRRRREILGWRRGQC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48720.1 unknown protein2.0e-0640.98Show/hide
Query:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDCDKSTKSKWRN
        MA+      +P LTK+NY+NWS++MKA+LG+ D WE+VE    EP++     ++ K   R+
Subjt:  MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVE----EPKDTTDCDKSTKSKWRN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATATGATGGGTCAAATGTCGCTACCGCGATTAACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTCGGTTCTCAAGATGCTTGGGAGGT
GGTCGAAGAACCAAAGGATACCACGGACTGTGACAAATCAACTAAATCGAAATGGAGAAATGTTACCCGAGATGGGGTTGTGGAGAAGATCTTGAGGTCATTAACCAACA
ACTTCAAGAATGTTGTATGTGCGATAGAAGAGTCAAATGACCTAACGAAGTTCACGGATGATGAGCTCGCCGGTTCTCTTGAGGCACACGAACAACGTAAGAAAAAGAAG
GAGACACTCGATCAAGCGCTTCAGACCAAGGCATCAATAAAAGATGAAAAGCTTGGATCCGAAAAATTCAAAGAGAGGTCGAGAAACACTCTTCATGAAGATGTCAACAA
CCTGGTTCAAAGGAGGCGTAGAGAAATACTTGGTTGGCGAAGAGGCCAGTGCGGCGCCCAGATTCCAAAGGATGAAGGGTTGATTGGGAAGAAAATGAGACAGGCTATGT
TGGCTAAGAGGAAACCGATTGTGTTGGAGAAAGTGAGCCATGGAGACTGCCCCTGCAGCGTCAAAGCCAGCAGTGGTGGTGGGGAAGAACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAATATGATGGGTCAAATGTCGCTACCGCGATTAACGAAGACGAACTACGAGAATTGGAGCATCCAAATGAAAGCTCTTCTCGGTTCTCAAGATGCTTGGGAGGT
GGTCGAAGAACCAAAGGATACCACGGACTGTGACAAATCAACTAAATCGAAATGGAGAAATGTTACCCGAGATGGGGTTGTGGAGAAGATCTTGAGGTCATTAACCAACA
ACTTCAAGAATGTTGTATGTGCGATAGAAGAGTCAAATGACCTAACGAAGTTCACGGATGATGAGCTCGCCGGTTCTCTTGAGGCACACGAACAACGTAAGAAAAAGAAG
GAGACACTCGATCAAGCGCTTCAGACCAAGGCATCAATAAAAGATGAAAAGCTTGGATCCGAAAAATTCAAAGAGAGGTCGAGAAACACTCTTCATGAAGATGTCAACAA
CCTGGTTCAAAGGAGGCGTAGAGAAATACTTGGTTGGCGAAGAGGCCAGTGCGGCGCCCAGATTCCAAAGGATGAAGGGTTGATTGGGAAGAAAATGAGACAGGCTATGT
TGGCTAAGAGGAAACCGATTGTGTTGGAGAAAGTGAGCCATGGAGACTGCCCCTGCAGCGTCAAAGCCAGCAGTGGTGGTGGGGAAGAACAATAG
Protein sequenceShow/hide protein sequence
MANMMGQMSLPRLTKTNYENWSIQMKALLGSQDAWEVVEEPKDTTDCDKSTKSKWRNVTRDGVVEKILRSLTNNFKNVVCAIEESNDLTKFTDDELAGSLEAHEQRKKKK
ETLDQALQTKASIKDEKLGSEKFKERSRNTLHEDVNNLVQRRRREILGWRRGQCGAQIPKDEGLIGKKMRQAMLAKRKPIVLEKVSHGDCPCSVKASSGGGEEQ