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CmoCh05G008550 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008550
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L38
Genome locationCmo_Chr05:5480413..5481946
RNA-Seq ExpressionCmoCh05G008550
SyntenyCmoCh05G008550
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAF1701162.1 unnamed protein product [Brassica napus]1.4e-2693.94Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

CDP04642.1 unnamed protein product [Coffea canephora]4.8e-2796.97Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

KAA8527271.1 hypothetical protein F0562_034632 [Nyssa sinensis]4.8e-2796.97Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

KAF4348608.1 hypothetical protein G4B88_024086 [Cannabis sativa]1.1e-2698.46Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGMK
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+K
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGMK

XP_008793782.2 60S ribosomal protein L38 [Phoenix dactylifera]4.8e-2794.03Show/hide
Query:  MPSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        +P MPKQIHEIKDFLLTARRKDARS+KIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  MPSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

TrEMBL top hitse value%identityAlignment
A0A068U8M1 Uncharacterized protein2.3e-2796.97Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

A0A078I3U9 BnaC03g24210D protein6.7e-2793.94Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

A0A3P6AX25 Uncharacterized protein6.7e-2793.94Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P+MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

A0A5J5ADJ5 GRAS domain-containing protein2.3e-2796.97Show/hide
Query:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        P MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+
Subjt:  PSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

A0A7J6ENF3 Uncharacterized protein5.2e-2798.46Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGMK
        MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG+K
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGMK

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L384.5e-2893.75Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

P46291 60S ribosomal protein L385.5e-2689.06Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MPKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

P63173 60S ribosomal protein L386.3e-2278.12Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

Q32PB9 60S ribosomal protein L386.3e-2278.12Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MP++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

Q95V84 60S ribosomal protein L383.9e-2484.38Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MPKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family3.2e-2993.75Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM

AT3G59540.1 Ribosomal L38e protein family3.2e-2993.75Show/hide
Query:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM
        MPKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG+
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTT
CAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCC
CCGCAAAAGCTGAAAATTTACAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCATCTATGCCGAAGCAAATCCATGAGATAAAAGACTTTCTTCTGACTGCAAGAAGGAAGGATGCGCGGTCAGTTAAAATAAAGAGGAGCAAAGATGTAGTGAAGTT
CAAGGTTCGGTGCTCAAAGTACCTTTACACGCTCTGCGTCTTTGACTCTGAGAAGGCTGATAAATTGAAGCAGTCTCTTCCACCAGGTATGAAGTCTGCACTCTTCGGCC
CCGCAAAAGCTGAAAATTTACAGTAACATCCTGGTAAAGGTATTCCCACAACTTTTAACAGATTACCAAGTTCTAGCTGCTATGAAGCGAGAAGCATAAAACAGCCCATA
AAATTGTTATTGAGTGCAATGAGTTCTTTATTCAGTTAAGCAATAATGTAGAAAACCCAGTACCAGTTAGCGCTACTGAACCAAATAGTTTGAAATTATTTGATGCTGAT
ATGATGCTGCACTTCTTTTTTTATCCTGCAATAGCCCTTCTGTTGAAATTATTTTGCACTCTTGGTAAACGTGAGTTGACAACATAATTCTTGCTGTAAGTTCAAGTTTG
GGAATTTTCTCGGTGCGTTCTGTTTTTTTGTTCTCAATAAAAATGGGAACGTTTTGGTTTCTCATGCAGTTGAAATGTAACTAAGATATGACAAATGTCATCAATATATC
CTCAATGTTCTTCACGGCTTCAATCTCTGGTATTGAGTTTGGAAAGAAAAGAAAAACTACGAAAATAACAGAAATTTCATAGAATATGCC
Protein sequenceShow/hide protein sequence
MPSMPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGMKSALFGPAKAENLQ