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CmoCh05G008580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr05:5564796..5568528
RNA-Seq ExpressionCmoCh05G008580
SyntenyCmoCh05G008580
Gene Ontology termsGO:0006376 - mRNA splice site selection (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029944.1 putative RNA-binding protein Luc7-like 1 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-4994.31Show/hide
Query:  EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNI
        EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVV      TVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMN+
Subjt:  EERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNI

Query:  QGTMIVTSAVTGTKQFLLWIQWK
        QGTMIVTSAVTGTKQFLLWIQWK
Subjt:  QGTMIVTSAVTGTKQFLLWIQWK
TYK22190.1 putative RNA-binding protein Luc7-like 2 isoform X1 [Cucumis melo var. makuwa]6.7e-2176.67Show/hide
Query:  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAV
        +QRSVVE+LIENLVET+TVVIVV      TVEGIMTVGAGIVIGI IGIVM  +A ETQIALMILE+V VHAH QQT+N+QGTMI TS V
Subjt:  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAV
TrEMBL top hitse value%identityAlignment
A0A5D3DFM5 Putative RNA-binding protein Luc7-like 2 isoform X13.3e-2176.67Show/hide
Query:  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAV
        +QRSVVE+LIENLVET+TVVIVV      TVEGIMTVGAGIVIGI IGIVM  +A ETQIALMILE+V VHAH QQT+N+QGTMI TS V
Subjt:  DQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHGQQTMNIQGTMIVTSAV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAATGACAACCATGCAACAGCGAAAGATTGGGAATGTATTTTGGAAGAAAGAAACAAAAGCCACAAGGTTGATCGACATGATGATCAGCGATGCTCTCTTTCAGA
TCAAAGGAGTGTAGTAGAGAACCTGATAGAGAACCTAGTAGAGACCATGACCGTGGTGATAGTCGTGACCGTGGAAGGTATAATGACCGTGGAAGGTATAATGACCGTAG
GAGCAGGGATCGTGATAGGTATAATGATCGGGATCGTTATGACCGGGAACGCATTAGAGACTCAGATTGCTCTTATGATTCTAGAAATTGTCACCGTTCACGCTCACGGT
CAACAGACCATGAACATTCAAGGGACTATGATCGTCACAAGCGCCGTGACCGGTACTAAACAGTTTTTACTGTGGATCCAATGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAATGACAACCATGCAACAGCGAAAGATTGGGAATGTATTTTGGAAGAAAGAAACAAAAGCCACAAGGTTGATCGACATGATGATCAGCGATGCTCTCTTTCAGA
TCAAAGGAGTGTAGTAGAGAACCTGATAGAGAACCTAGTAGAGACCATGACCGTGGTGATAGTCGTGACCGTGGAAGGTATAATGACCGTGGAAGGTATAATGACCGTAG
GAGCAGGGATCGTGATAGGTATAATGATCGGGATCGTTATGACCGGGAACGCATTAGAGACTCAGATTGCTCTTATGATTCTAGAAATTGTCACCGTTCACGCTCACGGT
CAACAGACCATGAACATTCAAGGGACTATGATCGTCACAAGCGCCGTGACCGGTACTAAACAGTTTTTACTGTGGATCCAATGGAAGTGAAAGTACAGGAGCTTATTTTG
ACAATAGATTTGAGAGAGAGAGAGGTATGGTTGTGCTGATTACTGGAATTTTATATGTAGCTGTTAGTGGGGAGTAGTTTCCTTGAGGTCTTCTTTTAACACATGGGCTT
AAATTATGGGATACATCAATTCTTCATATTCTCATTGGGGAGACTTCATCACCGTATGTTGGTAACATTTGACCTATAACTATTGACCGACCACCGTTTCATGTATTTAG
AACCAAAATTCATATGCAGGCCTGATGAACAATTTGTTTCTTTTAATGTTCGCCC
Protein sequenceShow/hide protein sequence
MANDNHATAKDWECILEERNKSHKVDRHDDQRCSLSDQRSVVENLIENLVETMTVVIVVTVEGIMTVEGIMTVGAGIVIGIMIGIVMTGNALETQIALMILEIVTVHAHG
QQTMNIQGTMIVTSAVTGTKQFLLWIQWK