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CmoCh05G008850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationCmo_Chr05:6050694..6051381
RNA-Seq ExpressionCmoCh05G008850
SyntenyCmoCh05G008850
Gene Ontology termsGO:0006457 - protein folding (biological process)
GO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0000774 - adenyl-nucleotide exchange factor activity (molecular function)
GO:0016168 - chlorophyll binding (molecular function)
GO:0042803 - protein homodimerization activity (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0051087 - chaperone binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF42583.1 Photosystem II P680 chlorophyll A apoprotein, putative [Ricinus communis]1.9e-1091.67Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWADSMALYELAVFDPSDPV+DPIWRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
KAF4396265.1 hypothetical protein F8388_019811 [Cannabis sativa]2.5e-1086.84Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
        MH ALVAGWA SMALYELAVFDPSDPVLDP+W+QGI N
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
PNT08266.1 hypothetical protein POPTR_013G137100 [Populus trichocarpa]1.5e-1082.5Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+ N +
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET
QCE14653.1 photosystem II CP47 chlorophyll apoprotein [Vigna unguiculata]1.1e-1089.47Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
XP_013633081.1 PREDICTED: photosystem II CP47 reaction center protein-like [Brassica oleracea var. oleracea]1.1e-1089.47Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
TrEMBL top hitse value%identityAlignment
A0A2G3B7N7 Photosystem II CP47 reaction center protein1.6e-1091.67Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MHIALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
A0A2K1Y5F1 Uncharacterized protein7.2e-1182.5Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+ N +
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNET
A0A4D6NLH0 Photosystem II CP47 chlorophyll apoprotein5.5e-1189.47Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQGI N
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
A0A7J6HMP4 Uncharacterized protein1.2e-1086.84Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
        MH ALVAGWA SMALYELAVFDPSDPVLDP+W+QGI N
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRN
B9S1B8 Photosystem II P680 chlorophyll A apoprotein, putative9.4e-1191.67Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWADSMALYELAVFDPSDPV+DPIWRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
SwissProt top hitse value%identityAlignment
A4QJE1 Photosystem II CP47 reaction center protein1.6e-1288.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
A4QJM5 Photosystem II CP47 reaction center protein1.6e-1288.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
A4QK44 Photosystem II CP47 reaction center protein1.6e-1288.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
A9LYC6 Photosystem II CP47 reaction center protein1.6e-1288.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
Q3V508 Photosystem II CP47 reaction center protein1.6e-1288.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
Arabidopsis top hitse value%identityAlignment
ATCG00680.1 photosystem II reaction center protein B1.2e-1388.89Show/hide
Query:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI
        MH ALVAGWA SMALYELAVFDPSDPVLDP+WRQG+
Subjt:  MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGT
ATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATATAGCTCTAGTTGCTGGTTGGGCCGATTCAATGGCCCTATACGAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTTGATCCAATTTGGAGACAAGGT
ATAAGAAATGAAACAAAAGATACGGTAGAGCTAGGACAGTTATTGTATGAGGTCTACCCAATGCTAGATGCAGAGGCGCATAATAGATCGATATGA
Protein sequenceShow/hide protein sequence
MHIALVAGWADSMALYELAVFDPSDPVLDPIWRQGIRNETKDTVELGQLLYEVYPMLDAEAHNRSI