; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G008970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G008970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRibonuclease T(2)
Genome locationCmo_Chr05:6213347..6213936
RNA-Seq ExpressionCmoCh05G008970
SyntenyCmoCh05G008970
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR033130 - Ribonuclease T2, His active site 2
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022934270.1 ribonuclease MC-like [Cucurbita moschata]1.9e-3552.38Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL F   IL+PIAKSQ FD F              SG CVG G  SFTIH LWPQK  NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK
        +   W HEW  HGICSE++FDE AYFQTSI+LRH            +VP+  SKSKQ V++A+IKHF+
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK

XP_022935695.1 ribonuclease MC-like [Cucurbita moschata]1.2e-3754.71Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL FV V LLP+AKSQ FD F              SG CVG G NSFTIH LWPQKG NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEI
        +   W HEW  HGICSE+KFD+ AYFQTSI+LRH            +VP+  SKSKQ V+SA+I HFK+I
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEI

XP_022983351.1 ribonuclease MC-like [Cucurbita maxima]6.5e-3652.98Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL F   IL+PIAKSQ FD F               G CVG G NSFTIH LWPQK  NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK
        +   W HEW  HGICSE++FDE AYFQTSI+LRH            +VP+  SKSKQ V++A+IKHFK
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK

XP_023528964.1 ribonuclease MC-like [Cucurbita pepo subsp. pepo]2.2e-3653.25Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL FV  ILLP  KSQ FD F              SG C+G G NSFTIH LWPQKG NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKE
        +   W HEW  HGICSE+K+DE AYFQTSI+LRH            +VP+  SKSKQ V+SA+I HFK+
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKE

XP_038905534.1 ribonuclease MC-like [Benincasa hispida]5.7e-3248.15Show/hide
Query:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW
        NIV L F   IL PI +SQ FD F              SG CVG G  SFTIH LWPQKG +SVT   G SF + ++ +LENDL  VWP++I   N   W
Subjt:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW

Query:  THEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHF
         HEW KHGICSE+KFD+ AYFQT+I++RH            ++P+  SK+KQ V+S +  HF
Subjt:  THEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHF

TrEMBL top hitse value%identityAlignment
A0A0A0LC37 Ribonuclease T(2)8.0e-3244.63Show/hide
Query:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW
        ++VF  FV  IL PI KSQ FD F              SG CVG G  SFTIH LWPQKG  SVT   G  F + ++ +LENDL  VWP+++   N   W
Subjt:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW

Query:  THEWKKHGICSETKFDEVAYFQTSIHLRHLV------------PDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQ
         HEW KHGICSE+KFDE  YFQT+I++RH +            P+  SK+KQ V++A+  HF +      KK    Q
Subjt:  THEWKKHGICSETKFDEVAYFQTSIHLRHLV------------PDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQ

A0A1S3B8Q3 Ribonuclease T(2)3.6e-3246.91Show/hide
Query:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW
        ++VF  FV  IL PI KSQ FD F              SG CVG G  SFTIH LWPQKG  SVT   G SF + ++ +LE+DL  VWP+++   N   W
Subjt:  NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVW

Query:  THEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHF
         HEW KHGICSE+KFD+  YFQT+I++RH            +VP+  SK+KQ V++A+  HF
Subjt:  THEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHF

A0A6J1F776 Ribonuclease T(2)9.1e-3652.38Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL F   IL+PIAKSQ FD F              SG CVG G  SFTIH LWPQK  NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK
        +   W HEW  HGICSE++FDE AYFQTSI+LRH            +VP+  SKSKQ V++A+IKHF+
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK

A0A6J1FBD8 Ribonuclease T(2)5.7e-3854.71Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL FV V LLP+AKSQ FD F              SG CVG G NSFTIH LWPQKG NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEI
        +   W HEW  HGICSE+KFD+ AYFQTSI+LRH            +VP+  SKSKQ V+SA+I HFK+I
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEI

A0A6J1J1Y7 Ribonuclease T(2)3.1e-3652.98Show/hide
Query:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK
        M+ PN  +FL F   IL+PIAKSQ FD F               G CVG G NSFTIH LWPQK  NSVT   GTSF + Q+ +LENDL  VWP+LI   
Subjt:  MSIPNI-VFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEK

Query:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK
        +   W HEW  HGICSE++FDE AYFQTSI+LRH            +VP+  SKSKQ V++A+IKHFK
Subjt:  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFK

SwissProt top hitse value%identityAlignment
P23540 Ribonuclease MC2.4e-1739.58Show/hide
Query:  SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKY-RGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH
        S   SG C G G+ +FTIH LWPQ    S+T   +G+ F   ++ +L++ L  +WP+++   N   W+HEW KHG CSE+ F++ AYF+ ++ +R+
Subjt:  SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKY-RGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH

P42813 Ribonuclease 12.5e-0634.12Show/hide
Query:  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR
        F IH LWP             +K   +S I   L  ++    WP L        + W HEW+KHG CSE+  D+  YFQT+++L+
Subjt:  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR

P42815 Ribonuclease 39.5e-0634.94Show/hide
Query:  FTIHDLWP--QKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSV--WTHEWKKHGICSETKFDEVAYFQTSIHLR
        F IH LWP  + G         + F   ++  L +DL   WP L    N  +  WTHEW+KHG C+E++ D+  YF+  + L+
Subjt:  FTIHDLWP--QKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSV--WTHEWKKHGICSETKFDEVAYFQTSIHLR

P83618 Ribonuclease-like storage protein3.5e-0835.71Show/hide
Query:  INSFTIHDLWPQKGRNSVTKY-RGTSFIYKQL--LYLENDLVWPD-LIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR
        +N+FTIH L+P   + +   Y  GT+F    +     E  L WP      ++   W HEWKKHG CSE    +  YF+T++  R
Subjt:  INSFTIHDLWPQKGRNSVTKY-RGTSFIYKQL--LYLENDLVWPD-LIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR

Q7M438 Ribonuclease DdI1.9e-0641.46Show/hide
Query:  SFTIHDLWPQKGRNSVTKY-RGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETK--FDEVAYFQTSIHL
        +FTIH LWP+    S   +  G SF    +  LE+ L   WP L    N   WTHE+ KHG CS T    D   YF T I L
Subjt:  SFTIHDLWPQKGRNSVTKY-RGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETK--FDEVAYFQTSIHL

Arabidopsis top hitse value%identityAlignment
AT1G14210.1 Ribonuclease T2 family protein1.4e-0732.29Show/hide
Query:  GGGINSFTIHDLWPQKGRNS------VTKYRGTSFIYKQLLYLENDL----VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRHLV
        G   + F IH LWPQ    +       T     S I   +  +E       VW     E N  +W HEW KHG C ++ FD+ +YF+T++  +H V
Subjt:  GGGINSFTIHDLWPQKGRNS------VTKYRGTSFIYKQLLYLENDL----VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRHLV

AT1G14220.1 Ribonuclease T2 family protein6.7e-0734.94Show/hide
Query:  FTIHDLWPQKGRNSVTKY--RGTSFIYKQLLYLENDLV--WPDLIEEKNP--SVWTHEWKKHGICSETKFDEVAYFQTSIHLR
        F IH LWP     S        + F   Q+  L + L   WP L    N   + W HEW+KHG CSE+  D+  YF+ ++ L+
Subjt:  FTIHDLWPQKGRNSVTKY--RGTSFIYKQLLYLENDLV--WPDLIEEKNP--SVWTHEWKKHGICSETKFDEVAYFQTSIHLR

AT1G26820.1 ribonuclease 36.7e-0734.94Show/hide
Query:  FTIHDLWP--QKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSV--WTHEWKKHGICSETKFDEVAYFQTSIHLR
        F IH LWP  + G         + F   ++  L +DL   WP L    N  +  WTHEW+KHG C+E++ D+  YF+  + L+
Subjt:  FTIHDLWP--QKGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSV--WTHEWKKHGICSETKFDEVAYFQTSIHLR

AT2G02990.1 ribonuclease 11.8e-0734.12Show/hide
Query:  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR
        F IH LWP             +K   +S I   L  ++    WP L        + W HEW+KHG CSE+  D+  YFQT+++L+
Subjt:  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAATCCCAAACATAGTCTTCCTCTGGTTTGTTAGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACACTTTCAGTTTGTTCAGCAGTGGACTATGTGT
AGGAGGAGGGATAAATTCCTTCACAATCCATGACTTGTGGCCTCAGAAGGGAAGAAACTCGGTAACTAAGTATCGGGGCACCTCCTTTATTTATAAACAGCTTTTGTATT
TAGAAAACGATCTAGTTTGGCCAGATCTGATCGAGGAAAAGAACCCATCGGTTTGGACTCATGAATGGAAAAAACATGGGATTTGCTCAGAAACCAAATTCGACGAGGTA
GCCTACTTCCAAACATCCATCCATTTGAGGCACTTAGTTCCAGACAGGGTCTCCAAGTCAAAGCAAAGTGTGGACAGCGCCGTCATAAAGCATTTCAAGGAAATCTTGTT
CTTCGTTGTCAAAAAGCATCCAACGGCCCAATCCTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCCCAAACATAGTCTTCCTCTGGTTTGTTAGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACACTTTCAGTTTGTTCAGCAGTGGACTATGTGT
AGGAGGAGGGATAAATTCCTTCACAATCCATGACTTGTGGCCTCAGAAGGGAAGAAACTCGGTAACTAAGTATCGGGGCACCTCCTTTATTTATAAACAGCTTTTGTATT
TAGAAAACGATCTAGTTTGGCCAGATCTGATCGAGGAAAAGAACCCATCGGTTTGGACTCATGAATGGAAAAAACATGGGATTTGCTCAGAAACCAAATTCGACGAGGTA
GCCTACTTCCAAACATCCATCCATTTGAGGCACTTAGTTCCAGACAGGGTCTCCAAGTCAAAGCAAAGTGTGGACAGCGCCGTCATAAAGCATTTCAAGGAAATCTTGTT
CTTCGTTGTCAAAAAGCATCCAACGGCCCAATCCTATTGA
Protein sequenceShow/hide protein sequence
MSIPNIVFLWFVSVILLPIAKSQLFDTFSLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDLVWPDLIEEKNPSVWTHEWKKHGICSETKFDEV
AYFQTSIHLRHLVPDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQSY