CuGenDBv2

Gene ID	CmoCh05G009130
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	TMV resistance protein N-like
Genome location	Cmo_Chr05:7019109..7019778
RNA-Seq Expression	CmoCh05G009130
Synteny	CmoCh05G009130
Gene Ontology terms	NA
InterPro domains	IPR032675 - Leucine-rich repeat domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598998.1 Disease resistance protein RUN1, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-23

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

XP_022946581.1 TMV resistance protein N-like isoform X1 [Cucurbita moschata]

1.6e-23

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

XP_022946582.1 TMV resistance protein N-like isoform X2 [Cucurbita moschata]

1.6e-23

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

XP_022946583.1 TMV resistance protein N-like isoform X3 [Cucurbita moschata]

1.6e-23

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

XP_023545380.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111804816 [Cucurbita pepo subsp. pepo]

9.1e-24

39.59

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-
        C NFRK   YLS K LRYLN SH KKL+EI  FS  IN++ LY +KCTNLRVIHE+IGSLDSLV LDL+Q                        S  K+ 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                L+    GGCS FE+ P KW  PIHP CSSSNYGNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1G358 TMV resistance protein N-like isoform X2

1.4e-22

38.58

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-
        C NFRK   YLS K LRYLN SH KKL+EI  FS  IN++ LY +KCTNLRVIHE+IGSLDSLV L+L+Q                        S  K+ 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                L+     GCS FE+ P KW  PIHP CSSSNYGNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

A0A6J1G3D0 TMV resistance protein N-like isoform X1

1.4e-22

38.58

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-
        C NFRK   YLS K LRYLN SH KKL+EI  FS  IN++ LY +KCTNLRVIHE+IGSLDSLV L+L+Q                        S  K+ 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ------------------------SYFKI-

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                L+     GCS FE+ P KW  PIHP CSSSNYGNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

A0A6J1G421 TMV resistance protein N-like isoform X1

7.5e-24

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

A0A6J1G440 TMV resistance protein N-like isoform X2

7.5e-24

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

A0A6J1G4A0 TMV resistance protein N-like isoform X3

7.5e-24

38.07

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Query:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------
        C N +K   YLS K L++LN  H KKLQEI  FS  +N++ LYLKKCTNLRV+HE+IGSLD+LV LD+R         SY K+                 
Subjt:  CPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ--------SYFKI-----------------

Query:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF
                                                                LK    GGCS FE+LP KW+SPIHP+CSSSN+GNLP N MF
Subjt:  --------------------------------------------------------LKNFVFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMF

SwissProt top hits

e value

%identity

Alignment

V9M2S5 Disease resistance protein RPV1

9.8e-05

30.34

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Query:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ-----------SYFKILKNFVFGGCSTFEILPSK
        L+ ++ S+S+KL ++  FS+  N+++L L  C +L  IH ++G++  L TL LR               + L++     CS FE  P K
Subjt:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQ-----------SYFKILKNFVFGGCSTFEILPSK

V9M398 Disease resistance protein RUN1

1.3e-04

34.18

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Query:  KFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNF--VFGGCSTFEIL
        + L+ ++ S+S+KL ++  FS+  N+++L+L+ C +L  IH ++G++  L TL L+    K LKN     G   + EIL
Subjt:  KFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNF--VFGGCSTFEIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G65850.1 Disease resistance protein (TIR-NBS-LRR class) family

1.0e-04

29.67

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Query:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKI-----------LKNFVFGGCSTFEILPSKWN
        L ++  +HSK L+E+   ST  N+++L+L KC++L  +  +IG   +L  L L      +           L+     GCS  E+LP+  N
Subjt:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKI-----------LKNFVFGGCSTFEILPSKWN

AT1G65850.2 Disease resistance protein (TIR-NBS-LRR class) family

1.0e-04

29.67

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Query:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKI-----------LKNFVFGGCSTFEILPSKWN
        L ++  +HSK L+E+   ST  N+++L+L KC++L  +  +IG   +L  L L      +           L+     GCS  E+LP+  N
Subjt:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKI-----------LKNFVFGGCSTFEILPSKWN

AT4G16920.1 Disease resistance protein (TIR-NBS-LRR class) family

1.7e-04

32.5

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Query:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNFVFGGCSTFEILPSKWN
        L  ++ S S+ L EI   S   N+K LYL  C +L  +  TIG+L  LV L++++             C+  E+LP+  N
Subjt:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNFVFGGCSTFEILPSKWN

AT4G16950.1 Disease resistance protein (TIR-NBS-LRR class) family

1.7e-04

32.5

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Query:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNFVFGGCSTFEILPSKWN
        L  ++ S S+ L EI   S   N+K LYL  C +L  +  TIG+L  LV L++++             C+  E+LP+  N
Subjt:  LRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNFVFGGCSTFEILPSKWN

AT5G17880.1 disease resistance protein (TIR-NBS-LRR class)

1.0e-04

30.85

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Query:  SPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLR---------QSYFKILKNFVFGGCS---TFEILPSK
        +PK L+++N +HSKKL  +       N+++L L+ CT L+ +H  + ++  LV L+LR         +     LK  +  GCS   TF+++  K
Subjt:  SPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLR---------QSYFKILKNFVFGGCS---TFEILPSK

Sequences

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CDS sequence

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ATGGTGAATCGCCTGAGTATTGGAAAAAGGAGTAGATTGTGGTTGGTAGAAGACATTTTAAAGCTTTTTGTTAATAATTCGGTGGGTAACACTTGCCCAAACTTTAGAAA
GCCTCTCAGCTATCTTTCACCGAAATTTCTTAGATATTTGAATTTTTCTCACTCCAAAAAGCTTCAAGAAATTTTTTACTTCTCTACGACAATAAACATTAAAAAATTGT
ATCTTAAAAAATGCACAAATTTAAGAGTGATTCACGAGACTATTGGATCTTTGGATAGCCTTGTTACCTTGGACCTTAGACAAAGCTACTTCAAAATCTTAAAGAACTTC
GTCTTTGGTGGCTGTTCTACCTTTGAAATTCTCCCCAGTAAATGGAACTCACCAATTCATCCCATATGCTCTTCTTCCAATTATGGAAACTTACCGAAAAACCTTATGTT
TCCCAGTTGA

mRNA sequence

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Protein sequence

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MVNRLSIGKRSRLWLVEDILKLFVNNSVGNTCPNFRKPLSYLSPKFLRYLNFSHSKKLQEIFYFSTTINIKKLYLKKCTNLRVIHETIGSLDSLVTLDLRQSYFKILKNF
VFGGCSTFEILPSKWNSPIHPICSSSNYGNLPKNLMFPS

CmoCh05G009130 (gene) of Cucurbita moschata (Rifu) v1 genome