CuGenDBv2

Gene ID	CmoCh05G009690
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	centromere protein V-like
Genome location	Cmo_Chr05:7804855..7805265
RNA-Seq Expression	CmoCh05G009690
Synteny	CmoCh05G009690
Gene Ontology terms	GO:0016846 - carbon-sulfur lyase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006913 - CENP-V/GFA domain IPR011057 - Mss4-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6599075.1 Centromere protein V, partial [Cucurbita argyrosperma subsp. sororia]

9.0e-79

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

KAG7030011.1 Centromere protein V, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.0e-79

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_022946627.1 centromere protein V-like [Cucurbita moschata]

9.0e-79

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_022999779.1 centromere protein V-like [Cucurbita maxima]

3.2e-76

97.06

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTL +VEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

XP_023546052.1 centromere protein V [Cucurbita pepo subsp. pepo]

5.0e-77

97.79

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELV HNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CMD8 centromere protein V isoform X2

4.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A1S3CMF5 centromere protein V isoform X5

4.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A5D3CJK9 Centromere protein V isoform X1

4.0e-72

91.18

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M SELVVHNGGCHCK VRWRVEAP SVVAWDCNCS+CFMRANTHFIVPLERFKLLGDS NF+STYTFG+HTAKHTFCK CGITSFY PRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVE+RQFDGSNWEASY HTGIASFSKL+
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A6J1G4E1 centromere protein V-like

4.4e-79

100

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

A0A6J1KE30 centromere protein V-like

1.6e-76

97.06

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        MDSELVVHNGGCHCK VRWRVEAP SVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS
        CVDPGTL +VEIRQFDGSNWEASYGHTGIASFSKLS
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSKLS

SwissProt top hits

e value

%identity

Alignment

Q7Z7K6 Centromere protein V

3.5e-33

51.91

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Query:  LVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDP
        LV H GGCHC  VR+ V A   +  +DCNCS C  + N HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G  I   C+D 
Subjt:  LVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDP

Query:  GTLTHVEIRQFDGSNWE-ASYGHTGIASFSK
        GT+  +   +F+GS+WE A   H  I + SK
Subjt:  GTLTHVEIRQFDGSNWE-ASYGHTGIASFSK

Q9CXS4 Centromere protein V

1.6e-33

52.67

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Query:  LVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDP
        LV H GGCHC  VR+ V A   +  +DCNCS C  + N HFIVP  RFKLL  +++ I+TYTF TH A+HTFCK CG+ SFY PRSNP G  I   C+D 
Subjt:  LVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDP

Query:  GTLTHVEIRQFDGSNWE-ASYGHTGIASFSK
        GT+  V   +F+GS+WE A   H  I + SK
Subjt:  GTLTHVEIRQFDGSNWE-ASYGHTGIASFSK

Arabidopsis top hits

e value

%identity

Alignment

AT5G16940.1 carbon-sulfur lyases

1.7e-59

70.9

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M+SEL+ H GGCHC  ++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T K
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK

AT5G16940.2 carbon-sulfur lyases

1.7e-59

70.9

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Query:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK
        M+SEL+ H GGCHC  ++WRV+A  SV+AW CNCSDC MR N HFIVP   F+LL DSK+FI+TYTFGTHTAKHTFCKVCGITSFY PRSNPDGVA+T K
Subjt:  MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFK

Query:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK
        CV  GTL H+E++ +DG NWE S+  TGIASFSK
Subjt:  CVDPGTLTHVEIRQFDGSNWEASYGHTGIASFSK

Sequences

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CDS sequence

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ATGGACTCCGAGTTAGTTGTGCATAACGGTGGATGCCACTGCAAGAACGTAAGATGGCGAGTCGAAGCACCTACTAGTGTCGTAGCTTGGGATTGTAACTGTTCTGATTG
CTTCATGAGGGCCAATACACATTTTATTGTGCCTTTGGAACGGTTCAAACTTTTAGGAGATTCCAAGAACTTTATTTCAACCTATACGTTTGGTACTCACACTGCAAAAC
ATACCTTCTGTAAAGTTTGTGGCATTACCTCATTTTACCATCCACGCTCAAACCCAGATGGAGTTGCCATTACTTTCAAATGTGTTGATCCTGGAACATTGACCCATGTT
GAGATTAGGCAGTTTGATGGGAGCAACTGGGAGGCCTCATATGGTCATACAGGCATTGCTTCATTTTCTAAGCTGTCTTAG

mRNA sequence

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Protein sequence

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MDSELVVHNGGCHCKNVRWRVEAPTSVVAWDCNCSDCFMRANTHFIVPLERFKLLGDSKNFISTYTFGTHTAKHTFCKVCGITSFYHPRSNPDGVAITFKCVDPGTLTHV
EIRQFDGSNWEASYGHTGIASFSKLS

CmoCh05G009690 (gene) of Cucurbita moschata (Rifu) v1 genome