; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G009780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G009780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 24-A
Genome locationCmo_Chr05:7887989..7892219
RNA-Seq ExpressionCmoCh05G009780
SyntenyCmoCh05G009780
Gene Ontology termsGO:0030154 - cell differentiation (biological process)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR037366 - BOULE/DAZ family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599081.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]1.5e-14086.69Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

KAG7030017.1 putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-17779Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMPCLKNLEE
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMPCLKNLEE
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMPCLKNLEE

Query:  VCSSTRLCDEQQDKDPCGSMRRIKPRRYNVSRRLHCLILFSSHFCMFYLYRGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISSSQSCSPEKSDGV
                                                           GSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISSSQSCSPEKSDGV
Subjt:  VCSSTRLCDEQQDKDPCGSMRRIKPRRYNVSRRLHCLILFSSHFCMFYLYRGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISSSQSCSPEKSDGV

Query:  ESLQMVEKAYGRDAGLLFL
        ESLQMVEKAYGRDAGLLFL
Subjt:  ESLQMVEKAYGRDAGLLFL

XP_022946505.1 RNA-binding protein 24-A [Cucurbita moschata]1.5e-14086.69Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

XP_022999744.1 RNA-binding protein 24-A [Cucurbita maxima]8.2e-13985.32Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN+GRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNY GNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

XP_023546044.1 RNA-binding protein 24-A [Cucurbita pepo subsp. pepo]4.8e-13985.67Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSS FLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTP+IDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPY Y
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

TrEMBL top hitse value%identityAlignment
A0A0A0KHA9 RRM domain-containing protein4.1e-13683.96Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPP+SYG                                    GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

A0A1S3CME8 RNA-binding protein 24-A7.0e-13683.96Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPIS+G                                    GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

A0A5D3CHF9 RNA-binding protein 24-A7.0e-13683.96Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRAC DPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPIS+G                                    GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN LTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

A0A6J1G3W1 RNA-binding protein 24-A7.3e-14186.69Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

A0A6J1KGG8 RNA-binding protein 24-A4.0e-13985.32Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN+GRSKGYGFVTFRDPESARRACVDPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPPISY                                     GRLRPPAVYVGGMQPNRGNY GNFGYQQPVSYAYQQGLAYPPYGY
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
        ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QFGGPNVNPLTSSPMPTIQAPYPS +P
Subjt:  ATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

SwissProt top hitse value%identityAlignment
Q6P8A7 RNA-binding protein 246.8e-2760.82Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR   P  ++G+
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI

Q76LC6 RNA-binding protein 248.8e-2737.89Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGIICL
        DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR   P  ++G+  +
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGIICL

Query:  FGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQ---------GLAYPPYGYATYGPEYVYPQGGY
           +      + + +VY                    P+V +  +QP   +   +  Y      AY Q           AY  Y YA       Y     
Subjt:  FGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQ---------GLAYPPYGYATYGPEYVYPQGGY

Query:  NPFVGQQYLQIYGVPGSASPAIYHYGQ
          +  QQ L     PGSA+ A   +GQ
Subjt:  NPFVGQQYLQIYGVPGSASPAIYHYGQ

Q9BX46 RNA-binding protein 244.0e-2761.86Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI
        DTTYTK+FVGGL + T   ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR   P  ++G+
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI

Q9I8B3 RNA-binding protein 24-B6.8e-2760.82Show/hide
Query:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI
        DTTYTK+FVGGL + T   ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A RAC DP PIIDGR+AN NLA LG +PR   P  ++G+
Subjt:  DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG-RPR---PPISYGI

Q9M1S3 Probable RNA-binding protein ARP17.2e-2965.96Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG
        ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G+ILEAV+I+DK T RSKGYGFVTF+D ++A RAC D TPII+GRRANCNLASLG
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG

Arabidopsis top hitse value%identityAlignment
AT1G20880.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-8458.21Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRACVDPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRP

Query:  RPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--P
        RPP+ Y +I                                  GR+RPP+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   
Subjt:  RPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--P

Query:  QGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS
        QG Y P++GQQYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q G        +SPM  IQ+PYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS

AT1G20880.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.8e-8458.21Show/hide
Query:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRP
        S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTFRDPE+ARRACVDPTPIIDGRRANCNLASLGR 
Subjt:  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRP

Query:  RPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--P
        RPP+ Y +I                                  GR+RPP+ YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   
Subjt:  RPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--P

Query:  QGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS
        QG Y P++GQQYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   ++Q G        +SPM  IQ+PYPS
Subjt:  QGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPS

AT1G22330.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.2e-4442.57Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPI
        S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTFRD +SA RA  DP P+IDGR+ANCN+AS GRPRP  
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNP
          G                                +G  G    P+ Y GG Q +        G   PV  A    L YP YGY TY  EY Y Q  YN 
Subjt:  SYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNP

Query:  FVGQ-QYL--QIYGVPGSASPAI-------YHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSA
         + Q QY   Q+YG  G+ SP+        Y+Y Q     P  H    Y   H           +PS         NV   T S +PT Q P  S+
Subjt:  FVGQ-QYL--QIYGVPGSASPAI-------YHYGQLGQTVPGGH---GYGAVH--------GYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSA

AT1G76460.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-9459.66Show/hide
Query:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR
        MAYQ   G        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTFRDPE+ARRAC DPTPIIDGR
Subjt:  MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGR

Query:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY
        RANCNLASLGRPRPP+ Y +I                          P +     GRLRP + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG 
Subjt:  RANCNLASLGRPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGY

Query:  ATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP
          YGPEY+Y   QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   I+Q GGP V+ +T+S MP +QAPYPS +P
Subjt:  ATYGPEYVY--PQGGYNPFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMP

AT1G78260.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-4241.3Show/hide
Query:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPI
        S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTFR+ +SA RA  DP P+IDGR+ANCN+AS GRPRP  
Subjt:  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPI

Query:  SYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYN
          G                        Q   P  Y+        P+ Y               G   P+  A    L YP YGY TY P ++ Y Q  YN
Subjt:  SYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYN

Query:  PFVG-----QQYLQIYG----VPGSA------SPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPN--VNPLTSSPMPTIQAPYPSA
          +      QQ  Q+YG     P S+      SP  Y Y      VP  H +     Y        +F  P+  V P  SS  P +Q    S+
Subjt:  PFVG-----QQYLQIYG----VPGSA------SPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPN--VNPLTSSPMPTIQAPYPSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCTTGAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGG
TGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAG
GATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCAATTATTGATGGAAGGCGAGCTAATTGTAATCTGGCCTCACTTGGC
CGGCCTCGGCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCTTTATTGTTTAGCAAATCGTGTTGTTTGTTCATGTCATGTGTATATGTATGATCAAGAGACTTT
TCCTGGTTTATACAAAGGAAATGACGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGCAACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAAC
CGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACGGTTATGCTACTTATGGACCGGAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAG
CAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGG
ATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTTCTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGCAATGCCTT
GTCTTAAAAATCTAGAAGAAGTGTGTTCGTCAACTCGTTTATGTGATGAACAACAGGACAAGGATCCATGCGGGTCAATGAGGAGAATAAAACCAAGAAGATATAATGTA
TCGAGACGTCTTCATTGTTTAATACTATTTAGCTCACATTTCTGTATGTTTTACTTGTACCGTGGATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCT
CCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGTTCTTCACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCC
AGATGGTGGAGAAAGCATATGGAAGAGATGCAGGGCTGCTCTTTCTCTAA
mRNA sequenceShow/hide mRNA sequence
TCCGTCGTCAATCAAACAAAAGAAAGCAGGAAGTACTAACAACAGCGATGAAAAAGGAAATTCTAAACCCTTTCCTTCTTCTTTCCTTCCCCTTTTCCTTGTTTTCCTCC
TCTGCCGCCGCCGCCTCCCCCTCCCCTTTCTCTCCGCCGCCGCCGTCTCCTCCTCCGTCTCCACCACCCTTCAATTACTATGATCATAATACTCCTCCTTCCAGATTCCC
TTTTCCGATTCCCACTTTTTCCCACTAAAAATCCACCCTCTTCCTCTTCCCACGGTCCCTAGATCTCTTTATCTCCCCTCATCACCGACCTTCTCTTCCCCTCAGCCCTG
TTCCTCGTTGGCCCATCTCATCCCCCAATTCATTTCTAGGGTTTCCCGTTCTAATTATGATCACTGTTATTGGGATTCATCATTCCTCTTCTGCCTTCCTTTCCCTTTTT
CTACTTTCTCTTTATCATTCTTCTCCCACCCTTTTCTTCCCTTTCCAATCCCTTTCAATCTCCTCCTGATTTTCTCTGTAAATCCTCTCAATTCATAAGGGTTTTCCTAG
GGGTTTGATTTTTCTATGTGGGTTCCTCTCTAATCCTCCCCTAATCTTCCACTTGATCGAATCTCACTTACCCTTTGTGTCTCTGTTTATATTGTATATTGGGTGTTCAC
TTATTTCTCTCTTCTTCCTTTGGTTCTTAAGTTTCTCCATTAATAATGGCTTATCAGCATGGTCGGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCTT
GAACTCTCCCTTTGGTGATACTACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGTGAGACTATGAGGCGCTACTTTGAGCAGTTTGGGGAGATTC
TTGAGGCTGTTGTCATAACGGATAAGAATACAGGGAGATCTAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGTAGATCCTACTCCA
ATTATTGATGGAAGGCGAGCTAATTGTAATCTGGCCTCACTTGGCCGGCCTCGGCCACCTATATCTTATGGTATTATTTGCTTATTTGGTCTTTATTGTTTAGCAAATCG
TGTTGTTTGTTCATGTCATGTGTATATGTATGATCAAGAGACTTTTCCTGGTTTATACAAAGGAAATGACGGACGCTTAAGACCGCCTGCAGTGTATGTTGGTGGCATGC
AACCCAATAGGGGGAATTATATTGGAAATTTTGGCTATCAACAACCGGTTTCTTATGCTTATCAGCAGGGACTTGCATATCCTCCTTACGGTTATGCTACTTATGGACCG
GAGTATGTCTACCCGCAGGGTGGATATAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCGGGGTCAGCGAGCCCTGCTATTTATCATTATGGACAATT
AGGTCAAACAGTCCCCGGTGGTCATGGATATGGAGCAGTACATGGATACGCAATGCCAAGTCCTCAGATCGTGCAGTTTGGTGGACCTAATGTCAACCCGTTAACATCTT
CTCCAATGCCTACTATTCAGGCACCCTATCCTTCAGCAATGCCTTGTCTTAAAAATCTAGAAGAAGTGTGTTCGTCAACTCGTTTATGTGATGAACAACAGGACAAGGAT
CCATGCGGGTCAATGAGGAGAATAAAACCAAGAAGATATAATGTATCGAGACGTCTTCATTGTTTAATACTATTTAGCTCACATTTCTGTATGTTTTACTTGTACCGTGG
ATCCCAGCACCTGTTGCAGCACAACCACAGTTCATTGTCCATTCTCCTTCTCAGTTTGTACAAGGTAGCAGTTCTGACCAGACATCTGGGTGAGGAGTTGATCAGTTCTT
CACAGTCATGCTCACCAGAGAAGTCGGATGGTGTCGAGTCGCTCCAGATGGTGGAGAAAGCATATGGAAGAGATGCAGGGCTGCTCTTTCTCTAA
Protein sequenceShow/hide protein sequence
MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLG
RPRPPISYGIICLFGLYCLANRVVCSCHVYMYDQETFPGLYKGNDGRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ
QYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNPLTSSPMPTIQAPYPSAMPCLKNLEEVCSSTRLCDEQQDKDPCGSMRRIKPRRYNV
SRRLHCLILFSSHFCMFYLYRGSQHLLQHNHSSLSILLLSLYKVAVLTRHLGEELISSSQSCSPEKSDGVESLQMVEKAYGRDAGLLFL