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CmoCh05G010010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G010010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Genome locationCmo_Chr05:8055953..8062816
RNA-Seq ExpressionCmoCh05G010010
SyntenyCmoCh05G010010
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006406 - mRNA export from nucleus (biological process)
GO:0043248 - proteasome assembly (biological process)
GO:0008541 - proteasome regulatory particle, lid subcomplex (cellular component)
InterPro domainsIPR007834 - DSS1/SEM1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599102.1 Protein DSS1-like ON CHROMOSOME V, partial [Cucurbita argyrosperma subsp. sororia]5.0e-2898.61Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELESNAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

XP_004144232.1 protein DSS1 HOMOLOG ON CHROMOSOME V [Cucumis sativus]8.0e-2693.06Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAA+EEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELE+NAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

XP_022946391.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like [Cucurbita moschata]7.7e-29100Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

XP_022999790.1 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like [Cucurbita maxima]2.1e-2694.44Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAATEEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELESN EKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

XP_023546762.1 protein DSS1 HOMOLOG ON CHROMOSOME V-like isoform X2 [Cucurbita pepo subsp. pepo]3.3e-2797.22Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELESNAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

TrEMBL top hitse value%identityAlignment
A0A0A0KIG9 Uncharacterized protein3.9e-2693.06Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAA+EEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELE+NAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

A0A1S3CMK4 protein DSS1 HOMOLOG ON CHROMOSOME V-like3.9e-2693.06Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAA+EEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELE+NAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

A0A6J1G3J0 protein DSS1 HOMOLOG ON CHROMOSOME V-like3.7e-29100Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

A0A6J1KGK6 protein DELETION OF SUV3 SUPPRESSOR 1(I)-like1.0e-2694.44Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KAATEEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELESN EKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

A0A6J1KMT1 protein DSS1 HOMOLOG ON CHROMOSOME V-like8.6e-2691.67Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MATE KA TEEVKVDLFEDDDEFEEFEI+EEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLK ELE NAE+K
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

SwissProt top hitse value%identityAlignment
P60896 26S proteasome complex subunit SEM17.3e-0650Show/hide
Query:  EEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEK
        + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE +  K
Subjt:  EEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEK

Q3ZBR6 26S proteasome complex subunit SEM17.3e-0650Show/hide
Query:  EEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEK
        + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ ELE +  K
Subjt:  EEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEK

Q9FL96 Protein DSS1 HOMOLOG ON CHROMOSOME V2.0e-1973.97Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MA E KAA E VKVDLFEDDDEFEEFEI+E+W E +E KE++ QWEDDWDDDDV+DDFS QLK ELE+ +EKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

Q9VM46 Probable 26S proteasome complex subunit sem15.6e-0657.69Show/hide
Query:  LFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELES
        L E+DDEFEEF   E++ V + +E    WED+WDDD+V DDFS QLK  LES
Subjt:  LFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELES

Q9XIR8 Protein DELETION OF SUV3 SUPPRESSOR 1(I)3.4e-1972.97Show/hide
Query:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MA E KAAT E VK+DLFEDDDEFEEFEI+E+W E +E KE++QQWEDDWDDDDVNDDFS QL+ ELE+  +KK
Subjt:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

Arabidopsis top hitse value%identityAlignment
AT1G64750.1 deletion of SUV3 suppressor 1(I)2.4e-2072.97Show/hide
Query:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MA E KAAT E VK+DLFEDDDEFEEFEI+E+W E +E KE++QQWEDDWDDDDVNDDFS QL+ ELE+  +KK
Subjt:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

AT1G64750.2 deletion of SUV3 suppressor 1(I)2.4e-2072.97Show/hide
Query:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MA E KAAT E VK+DLFEDDDEFEEFEI+E+W E +E KE++QQWEDDWDDDDVNDDFS QL+ ELE+  +KK
Subjt:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK

AT1G64750.3 deletion of SUV3 suppressor 1(I)2.6e-1446.96Show/hide
Query:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDE-----------------------------------------EW-EVKEGKEITQQWEDDWDDDDVNDDF
        MA E KAAT E VK+DLFEDDDEFEEFEI+E                                         +W E +E KE++QQWEDDWDDDDVNDDF
Subjt:  MATEQKAATEE-VKVDLFEDDDEFEEFEIDE-----------------------------------------EW-EVKEGKEITQQWEDDWDDDDVNDDF

Query:  SLQLKIELESNAEKK
        S QL+ ELE+  +KK
Subjt:  SLQLKIELESNAEKK

AT5G45010.1 DSS1 homolog on chromosome V1.4e-2073.97Show/hide
Query:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK
        MA E KAA E VKVDLFEDDDEFEEFEI+E+W E +E KE++ QWEDDWDDDDV+DDFS QLK ELE+ +EKK
Subjt:  MATEQKAATEEVKVDLFEDDDEFEEFEIDEEW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTGAACAGAAAGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAGTTTGAGATTGATGAAGAATGGGAAGTCAAGGAAGG
TAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGATGACTTCTCGTTGCAGCTTAAGATAGAACTGGAGAGCAATGCGGAGAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
AAAAGGACAAAGGCTTGACGACTTGTCCCTTAAGGTATCTCGATTCGTTTTTTTTTCGTCACTAGAAATCAAGCAACAAGAGACTCCCTCGATCGTCCCTGCTCGACGGC
CATTTGAAGCTTCTGATCTTTCTCACAACTCTCTCTCAAGAAAACTAAGGATTTGTAGACCTGTGTGAGCTTTGTGATGGCAACTGAACAGAAAGCAGCTACTGAGGAAG
TGAAAGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAGTTTGAGATTGATGAAGAATGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGG
GATGATGATGATGTCAATGATGACTTCTCGTTGCAGCTTAAGATAGAACTGGAGAGCAATGCGGAGAAAAAATGA
Protein sequenceShow/hide protein sequence
MATEQKAATEEVKVDLFEDDDEFEEFEIDEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKIELESNAEKK