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CmoCh05G010940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G010940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionzinc finger matrin-type protein 2
Genome locationCmo_Chr05:8742823..8744523
RNA-Seq ExpressionCmoCh05G010940
SyntenyCmoCh05G010940
Gene Ontology termsGO:0140513 - nuclear protein-containing complex (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586229.1 Zinc finger matrin-type protein 2, partial [Cucurbita argyrosperma subsp. sororia]9.3e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
XP_008453709.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo]9.3e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
XP_011648855.1 zinc finger matrin-type protein 2 [Cucumis sativus]9.3e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
XP_022938279.1 zinc finger matrin-type protein 2 [Cucurbita moschata]9.3e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
XP_022965943.1 zinc finger matrin-type protein 2 [Cucurbita maxima]9.3e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
TrEMBL top hitse value%identityAlignment
A0A0A0LM02 U1-type domain-containing protein4.5e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
A0A1S3BWZ9 zinc finger matrin-type protein 24.5e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
A0A5A7U309 Zinc finger matrin-type protein 21.0e-0861.02Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               +KG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
A0A6J1FDL7 zinc finger matrin-type protein 24.5e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
A0A6J1HQF6 zinc finger matrin-type protein 24.5e-0962.71Show/hide
Query:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
        MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Subjt:  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein9.3e-0750.91Show/hide
Query:  ASNTVAGVDNTIRRKFDREECLERP--------------LKGSPVQTKPLKHRDY
        +SNT  GVDNT R+KFD EE  ER                KG PVQ  PLKHRDY
Subjt:  ASNTVAGVDNTIRRKFDREECLERP--------------LKGSPVQTKPLKHRDY
AT3G05760.2 C2H2 and C2HC zinc fingers superfamily protein9.3e-0750.91Show/hide
Query:  ASNTVAGVDNTIRRKFDREECLERP--------------LKGSPVQTKPLKHRDY
        +SNT  GVDNT R+KFD EE  ER                KG PVQ  PLKHRDY
Subjt:  ASNTVAGVDNTIRRKFDREECLERP--------------LKGSPVQTKPLKHRDY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCATGCCAGCAATACTGTTGCTGGAGTTGATAACACCATCAGAAGAAAATTTGACCGAGAGGAGTGTTTGGAACGGCCTCTGAAAGGATCGCCAGTGCAGACAAA
ACCATTGAAGCATAGAGATTACGATTGGGAAAAACCCAGGCTATCAAATTTTGGTCCGTGGCCTCTCGGTGGATGCTGCTGTAGATTCAAGTTCTATGTGGCAACTTTAT
TTGAAATGTGCAGGAGCGGCTTGAAGTTCTCTAAAAGAGAAAAACGCCAGGAAGCTTCACAGAACAAGGTAAAGCTTAAGAGTTCAGAGCTAGCCATGCCATGCCATGCC
TTATGGATTGATGCGCAAGGGAAGATCGAAACTTGGGCTTCCCAGCCTTCTGGACTGTAA
mRNA sequenceShow/hide mRNA sequence
ATTCAGTGGTGCGGTCAAGTTTTTTTTCGGCGGCGATGGCTCATGCCAGCAATACTGTTGCTGGAGTTGATAACACCATCAGAAGAAAATTTGACCGAGAGGAGTGTTTG
GAACGGCCTCTGAAAGGATCGCCAGTGCAGACAAAACCATTGAAGCATAGAGATTACGATTGGGAAAAACCCAGGCTATCAAATTTTGGTCCGTGGCCTCTCGGTGGATG
CTGCTGTAGATTCAAGTTCTATGTGGCAACTTTATTTGAAATGTGCAGGAGCGGCTTGAAGTTCTCTAAAAGAGAAAAACGCCAGGAAGCTTCACAGAACAAGGTAAAGC
TTAAGAGTTCAGAGCTAGCCATGCCATGCCATGCCTTATGGATTGATGCGCAAGGGAAGATCGAAACTTGGGCTTCCCAGCCTTCTGGACTGTAA
Protein sequenceShow/hide protein sequence
MAHASNTVAGVDNTIRRKFDREECLERPLKGSPVQTKPLKHRDYDWEKPRLSNFGPWPLGGCCCRFKFYVATLFEMCRSGLKFSKREKRQEASQNKVKLKSSELAMPCHA
LWIDAQGKIETWASQPSGL