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CmoCh05G011300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G011300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionFormamidopyrimidine-DNA glycosylase
Genome locationCmo_Chr05:9019139..9020488
RNA-Seq ExpressionCmoCh05G011300
SyntenyCmoCh05G011300
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048017.1 hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa]1.1e-3981.9Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF
        MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTASK VL C + KSIS NWEN   VRLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF

Query:  VDRIT
        +DRIT
Subjt:  VDRIT

KAG7030230.1 hypothetical protein SDJN02_08577, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-4395.4Show/hide
Query:  KEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
        +EMPPWKLAKVTVVPRRAGTASK VLSCC+NKSISNWENCHPVRLTSRPFWG+VSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT
Subjt:  KEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT

XP_022946526.1 uncharacterized protein LOC111450562 [Cucurbita moschata]1.3e-53100Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD
        MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD

Query:  RIT
        RIT
Subjt:  RIT

XP_022999037.1 uncharacterized protein LOC111493548 [Cucurbita maxima]5.6e-4995.19Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV
        MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASK VLSCC+NKSIS NWENC PVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEA V
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV

Query:  DRIT
        DRIT
Subjt:  DRIT

XP_023545344.1 uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo]4.6e-5197.12Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV
        MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTAS FVLSCC+NKSIS NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV

Query:  DRIT
        DRIT
Subjt:  DRIT

TrEMBL top hitse value%identityAlignment
A0A0A0LJQ7 Uncharacterized protein9.1e-3779.05Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF
        MASFVSLSFSVPQ+  KE+PP KLAK T+V RRAGTASK VL   + KSIS NWEN   VRLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF

Query:  VDRIT
        +DRIT
Subjt:  VDRIT

A0A5A7U1B8 Uncharacterized protein5.2e-4081.9Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF
        MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTASK VL C + KSIS NWEN   VRLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF

Query:  VDRIT
        +DRIT
Subjt:  VDRIT

A0A5D3CPK7 Uncharacterized protein2.6e-3980.95Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF
        MASFVSLSFSVPQ+  KE+PPWKLAK TVV RRAGTA K VL C + KSIS NWEN   VRLTSRPFWGIVSSSSRN+V L GYWVGPDVDDGWGYIEAF
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLV-LAGYWVGPDVDDGWGYIEAF

Query:  VDRIT
        +DRIT
Subjt:  VDRIT

A0A6J1G3X3 uncharacterized protein LOC1114505626.3e-54100Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD
        MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVD

Query:  RIT
        RIT
Subjt:  RIT

A0A6J1K9Q0 uncharacterized protein LOC1114935482.7e-4995.19Show/hide
Query:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV
        MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASK VLSCC+NKSIS NWENC PVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEA V
Subjt:  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFV

Query:  DRIT
        DRIT
Subjt:  DRIT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGAAATGCCACCATGGAAACTGGCTAAAGTCACAGTAGTTCCAAGGCGAGCTGGAACAGC
TTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAAGACCTTTTTGGGGAATAGTTTCTTCTAGTT
CCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGATCGGATTACTTAA
mRNA sequenceShow/hide mRNA sequence
TGGGGGTTTTGTAATTTCGTTGCTGCCTTCATGGCGAGTTTCGTTTCTCTGAGCTTCTCCGTTCCACAGGTCATTTTCAAGGAAATGCCACCATGGAAACTGGCTAAAGT
CACAGTAGTTCCAAGGCGAGCTGGAACAGCTTCGAAGTTTGTGCTATCCTGTTGCACAAATAAATCCATATCTAATTGGGAAAACTGCCATCCAGTACGGTTAACTTCAA
GACCTTTTTGGGGAATAGTTTCTTCTAGTTCCAGGAATTTGGTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTGTTGAT
CGGATTACTTAACTATTCAAACTTTGAATTCCACTTCTTGATTTTCTTTTGTTTACTATGTCTGATCTTAGTCGAATGCATCAGTCACTTGCTTTCTCCAAAATATCTGA
AACTGC
Protein sequenceShow/hide protein sequence
MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSISNWENCHPVRLTSRPFWGIVSSSSRNLVLAGYWVGPDVDDGWGYIEAFVDRIT