CuGenDBv2

Gene ID	CmoCh05G011920
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Reverse transcriptase
Genome location	Cmo_Chr05:9358701..9360398
RNA-Seq Expression	CmoCh05G011920
Synteny	CmoCh05G011920
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

3.9e-277

81.74

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

3.9e-277

81.74

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]

1.8e-277

81.92

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQKKKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]

3.3e-284

84.81

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAP+GAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPII+DLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCT+MNQVF+EYLDQFV+VYLDDIVVYS TL+EH++HL+LVFDKLRQNQLYVKKEKCAFAQ  I FLGHV+  GQ
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        ISMD+DK+KAIQEW+VPTSV ELRSFLGLANYYRRF+EGFSRRA P+TELLKK   W WS + Q AFE+LK  MM+GPVLGL DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q+ HPI Y SRKLN+AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSA CHFF+QPKLT+KQARWQE LAEFDFKFEHKAGKSNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRKGEHA LCMLAHIH+SK DGS+RD+I E+    PSA+ VVELAK  KTRQFWVEGDLL T+GN LYVPRTG LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWP+M +D+MQYTKTCLICQQ KVE+ K++GLLEPLP PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]

0.0e+00

98.73

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELLK GFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCI+FLGHVVRCGQ
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTM RGPVLGLVDVTKPFEVETDASDFAL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVLIQEGHPIAY SRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEH HKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UXR6 Reverse transcriptase

1.9e-277

81.74

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

A0A5D3BRZ6 Reverse transcriptase

1.9e-277

81.74

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

A0A5D3C4R1 Reverse transcriptase

1.9e-277

81.74

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQ+KKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

A0A5D3C9P8 Reverse transcriptase

8.5e-278

81.92

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAPYGAPVLFQKKKDG+LRLCIDYRALNK+TVRNKYPLPII+DLFD+LHGAKYF+KLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCTLMNQVF+EYLD+FV+VYLDDIVVYSTT+EEH+ HL+ VF KL++NQLYVK+EKC+FAQ  INFLGHV+ CG+
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        I M+  KI AI++W +P SVSELRSFLGLANYYRRFVEGFS+RA+PLTELLKKD  W+W  +CQ AF+ LK  +M GP+LG+ DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q GHPIAY SRKLN AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSATCHFF QPKLT+KQARWQE LAEFDF+FEHK G SNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRK EHAA+C+LAH+  S+I GS+RD ++E   KD +A+ V+ LAKAGKTRQFWVE DLL+TKGNRLYVPR G LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWPNMRDD+MQYTKTCLICQQDKVEK KV+GLL+PLP+PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

A0A6J1D906 Reverse transcriptase

1.6e-284

84.81

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        MAPPELAELRKQLDELL  GFIRPAKAP+GAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPII+DLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
        TTCVTRYGAFEFLVM FGLTNAPATFCT+MNQVF+EYLDQFV+VYLDDIVVYS TL+EH++HL+LVFDKLRQNQLYVKKEKCAFAQ  I FLGHV+  GQ
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
        ISMD+DK+KAIQEW+VPTSV ELRSFLGLANYYRRF+EGFSRRA P+TELLKK   W WS + Q AFE+LK  MM+GPVLGL DVTKPFEVETDASD+AL
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA
        GGVL+Q+ HPI Y SRKLN+AERRYTVSEKEMLAVVHCLR WRQYLLGS FVVKTDNSA CHFF+QPKLT+KQARWQE LAEFDFKFEHKAGKSNQAADA
Subjt:  GGVLIQEGHPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADA

Query:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA
        LSRKGEHA LCMLAHIH+SK DGS+RD+I E+    PSA+ VVELAK  KTRQFWVEGDLL T+GN LYVPRTG LRKKL+ ECHDTLWAGHPGWQRTYA
Subjt:  LSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYA

Query:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        L+KKGYFWP+M +D+MQYTKTCLICQQ KVE+ K++GLLEPLP PTRPWESVS
Subjt:  LIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.5e-93

33.04

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        + P ++  +  ++++ LK G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
               G FE+LVM +G++ APA F   +N +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + KC F Q+ + F+G+ +    
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
         +   + I  + +WK P +  ELR FLG  NY R+F+   S+   PL  LLKKD  W W+     A EN+K  ++  PVL   D +K   +ETDASD A+
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA
        G VL Q+      +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+         +      + ARWQ  L +F+F+  ++ 
Subjt:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA

Query:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC
        G +N  ADALSR  +             +  ++   I    ++ +   +  D     ++            ++  LLI   +++ +P   +L + +I++ 
Subjt:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC

Query:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        H+     HPG +    +I + + W  +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S
Subjt:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

P0CT35 Transposon Tf2-2 polyprotein

2.5e-93

33.04

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        + P ++  +  ++++ LK G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
               G FE+LVM +G++ APA F   +N +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + KC F Q+ + F+G+ +    
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
         +   + I  + +WK P +  ELR FLG  NY R+F+   S+   PL  LLKKD  W W+     A EN+K  ++  PVL   D +K   +ETDASD A+
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA
        G VL Q+      +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+         +      + ARWQ  L +F+F+  ++ 
Subjt:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA

Query:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC
        G +N  ADALSR  +             +  ++   I    ++ +   +  D     ++            ++  LLI   +++ +P   +L + +I++ 
Subjt:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC

Query:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        H+     HPG +    +I + + W  +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S
Subjt:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

P0CT36 Transposon Tf2-3 polyprotein

2.5e-93

33.04

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Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        + P ++  +  ++++ LK G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
               G FE+LVM +G++ APA F   +N +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + KC F Q+ + F+G+ +    
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
         +   + I  + +WK P +  ELR FLG  NY R+F+   S+   PL  LLKKD  W W+     A EN+K  ++  PVL   D +K   +ETDASD A+
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA
        G VL Q+      +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+         +      + ARWQ  L +F+F+  ++ 
Subjt:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA

Query:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC
        G +N  ADALSR  +             +  ++   I    ++ +   +  D     ++            ++  LLI   +++ +P   +L + +I++ 
Subjt:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC

Query:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        H+     HPG +    +I + + W  +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S
Subjt:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

P0CT37 Transposon Tf2-4 polyprotein

2.5e-93

33.04

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        + P ++  +  ++++ LK G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
               G FE+LVM +G++ APA F   +N +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + KC F Q+ + F+G+ +    
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
         +   + I  + +WK P +  ELR FLG  NY R+F+   S+   PL  LLKKD  W W+     A EN+K  ++  PVL   D +K   +ETDASD A+
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA
        G VL Q+      +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+         +      + ARWQ  L +F+F+  ++ 
Subjt:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA

Query:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC
        G +N  ADALSR  +             +  ++   I    ++ +   +  D     ++            ++  LLI   +++ +P   +L + +I++ 
Subjt:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC

Query:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        H+     HPG +    +I + + W  +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S
Subjt:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

P0CT41 Transposon Tf2-12 polyprotein

2.5e-93

33.04

Show/hide

Query:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK
        + P ++  +  ++++ LK G IR +KA    PV+F  KK+GTLR+ +DY+ LNK    N YPLP+I  L  ++ G+  FTKLDL+S Y+ +R+ +GDE K
Subjt:  MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPK

Query:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ
               G FE+LVM +G++ APA F   +N +  E  +  V+ Y+DDI+++S +  EH  H+K V  KL+   L + + KC F Q+ + F+G+ +    
Subjt:  TTCVTRYGAFEFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQ

Query:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL
         +   + I  + +WK P +  ELR FLG  NY R+F+   S+   PL  LLKKD  W W+     A EN+K  ++  PVL   D +K   +ETDASD A+
Subjt:  ISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFAL

Query:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA
        G VL Q+      +P+ Y S K++ A+  Y+VS+KEMLA++  L+ WR YL  +   F + TD+         +      + ARWQ  L +F+F+  ++ 
Subjt:  GGVLIQEG-----HPIAYGSRKLNDAERRYTVSEKEMLAVVHCLRVWRQYLLGS--QFVVKTDNSATCHFF--DQPKLTAKQARWQESLAEFDFKFEHKA

Query:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC
        G +N  ADALSR  +             +  ++   I    ++ +   +  D     ++            ++  LLI   +++ +P   +L + +I++ 
Subjt:  GKSNQAADALSRKGEHAALC-------MLAHIHSSKIDGSMRDIIKEHFHKDPSAKAVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQEC

Query:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS
        H+     HPG +    +I + + W  +R  I +Y + C  CQ +K    K  G L+P+P   RPWES+S
Subjt:  HDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWESVS

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

5.3e-22

41.54

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Query:  HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLG--HVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSW
        HL +V     Q+Q Y  ++KCAF Q  I +LG  H++    +S D  K++A+  W  P + +ELR FLGL  YYRRFV+ + +   PLTELLKK +   W
Subjt:  HLKLVFDKLRQNQLYVKKEKCAFAQTCINFLG--HVVRCGQISMDSDKIKAIQEWKVPTSVSELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSW

Query:  SNDCQMAFENLKTTMMRGPVLGLVDVTKPF
        +    +AF+ LK  +   PVL L D+  PF
Subjt:  SNDCQMAFENLKTTMMRGPVLGLVDVTKPF

Sequences

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CDS sequence

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ATGGCTCCGCCCGAGCTAGCCGAATTGAGGAAACAACTGGATGAGTTGTTGAAGGTGGGATTCATTCGCCCGGCAAAGGCCCCTTATGGAGCCCCCGTACTGTTCCAGAA
GAAGAAAGATGGGACGTTGCGTCTGTGCATAGACTATAGAGCCTTAAACAAGGTGACAGTACGCAACAAATATCCTCTACCGATAATATCCGACTTGTTCGACCAACTTC
ACGGGGCCAAGTACTTCACGAAGTTGGACTTACGATCAGGATATTATCAAGTACGTATTGCCGAAGGGGACGAACCCAAGACGACGTGCGTAACAAGATATGGGGCCTTT
GAATTCCTAGTAATGTCCTTTGGCTTGACAAACGCCCCAGCTACGTTCTGCACGTTGATGAACCAGGTTTTTTACGAATACCTGGATCAGTTCGTCATAGTATACCTCGA
CGACATTGTTGTTTACAGCACAACCCTCGAGGAACACAAAGTGCATTTGAAGTTAGTGTTTGACAAGCTCCGGCAGAACCAGCTGTATGTGAAGAAGGAGAAATGTGCAT
TCGCACAAACATGCATCAACTTCCTTGGACATGTCGTCAGATGTGGACAAATTAGTATGGATAGCGACAAGATAAAAGCTATCCAAGAATGGAAGGTTCCTACTTCCGTA
TCTGAGTTGCGGTCCTTCTTAGGACTAGCCAACTACTATAGGCGGTTCGTCGAAGGGTTTTCACGACGAGCCGCCCCATTGACAGAGCTGTTGAAGAAAGACCACCCTTG
GTCGTGGTCGAACGATTGTCAAATGGCCTTCGAAAATCTGAAAACAACCATGATGAGGGGTCCTGTCCTCGGGTTGGTAGACGTCACAAAGCCATTTGAAGTAGAAACCG
ATGCTTCCGACTTTGCTCTCGGTGGAGTCCTTATTCAAGAAGGCCACCCCATCGCTTACGGAAGTCGAAAGCTCAATGATGCCGAACGAAGATACACTGTCTCCGAGAAA
GAAATGCTGGCTGTAGTCCATTGCCTTCGAGTTTGGAGACAGTATCTCTTAGGATCACAGTTCGTAGTGAAGACGGATAACAGCGCCACTTGCCACTTCTTTGACCAACC
AAAATTAACAGCAAAACAAGCCCGGTGGCAGGAGTCGTTGGCCGAATTCGACTTCAAGTTCGAACACAAAGCAGGAAAGAGTAATCAAGCAGCCGACGCGCTGAGTCGGA
AGGGCGAACATGCGGCCCTGTGCATGTTAGCCCATATTCATTCAAGTAAGATCGATGGATCGATGCGCGACATCATCAAGGAACATTTTCACAAAGACCCATCGGCCAAA
GCTGTTGTCGAACTAGCTAAGGCTGGAAAGACACGGCAGTTTTGGGTTGAGGGGGACCTCCTGATAACCAAAGGAAACAGATTGTACGTCCCAAGAACAGGGGAACTGAG
GAAGAAGCTCATTCAGGAATGTCATGATACCTTGTGGGCCGGACATCCTGGGTGGCAAAGAACATACGCCCTAATAAAGAAGGGGTACTTCTGGCCAAACATGCGAGACG
ACATCATGCAATACACCAAGACGTGCCTTATCTGTCAACAGGATAAGGTCGAGAAAGCCAAAGTCTCTGGACTCTTGGAACCTCTACCTATGCCAACAAGACCCTGGGAA
AGTGTCTCTGGACTTCATAACACACCTCCCAAAAGTCGGAGAATATGA

mRNA sequence

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Protein sequence

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MAPPELAELRKQLDELLKVGFIRPAKAPYGAPVLFQKKKDGTLRLCIDYRALNKVTVRNKYPLPIISDLFDQLHGAKYFTKLDLRSGYYQVRIAEGDEPKTTCVTRYGAF
EFLVMSFGLTNAPATFCTLMNQVFYEYLDQFVIVYLDDIVVYSTTLEEHKVHLKLVFDKLRQNQLYVKKEKCAFAQTCINFLGHVVRCGQISMDSDKIKAIQEWKVPTSV
SELRSFLGLANYYRRFVEGFSRRAAPLTELLKKDHPWSWSNDCQMAFENLKTTMMRGPVLGLVDVTKPFEVETDASDFALGGVLIQEGHPIAYGSRKLNDAERRYTVSEK
EMLAVVHCLRVWRQYLLGSQFVVKTDNSATCHFFDQPKLTAKQARWQESLAEFDFKFEHKAGKSNQAADALSRKGEHAALCMLAHIHSSKIDGSMRDIIKEHFHKDPSAK
AVVELAKAGKTRQFWVEGDLLITKGNRLYVPRTGELRKKLIQECHDTLWAGHPGWQRTYALIKKGYFWPNMRDDIMQYTKTCLICQQDKVEKAKVSGLLEPLPMPTRPWE
SVSGLHNTPPKSRRI

CmoCh05G011920 (gene) of Cucurbita moschata (Rifu) v1 genome