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CmoCh05G011930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G011930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionReverse transcriptase
Genome locationCmo_Chr05:9360602..9361234
RNA-Seq ExpressionCmoCh05G011930
SyntenyCmoCh05G011930
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.2e-7770.81Show/hide
Query:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        LCKGPH+V+ CPHRA+LTALQ S+Q  NE  VET  +K+ED + PRM ALKFLSA+Q++V  PK   EKGLMFVDATIN   +KST++DSGATHNFI++Q
Subjt:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL+LTI KD  KMK VN EALPIVGVSKRV  K+G WTG +D VVVRMDDFDVVLGMEFL+EHKVIPMPLAKC+++T  +PTV+  SIKQPG +RMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGL
        SA+QLK+GL
Subjt:  SAIQLKRGL

XP_022972955.1 uncharacterized protein LOC111471475 [Cucurbita maxima]4.3e-8091.01Show/hide
Query:  VETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKR
        VET+LDKKED DNPRMGALKFLSALQRKVEPKE+IEKGLMFVDATINS+ SKSTLIDSGATHNFI DQEARRL LTIGKD  KMK VNSEALPIVGVSKR
Subjt:  VETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKR

Query:  VPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGLA
        VPFKIG WTGELDLVVVRMD  DV+LGMEFLLEHKVIPMPLAKCLVITDRNPTVIP SIKQPGNLRMISAI LKRGLA
Subjt:  VPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGLA

XP_022975706.1 uncharacterized protein LOC111475733, partial [Cucurbita maxima]3.3e-10492.86Show/hide
Query:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        MLCKGPHKVSYCPHR SLTALQVSIQESN+ARVET+LDKKED DNPRMGALKFLSALQRKVEPKE++EKGLMFVDATIN QP++STLIDSGATHNFIADQ
Subjt:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL LTIG+DP KMKA+NSEALPIVGVSKRVPFKIG WTGELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGLA
        SAIQLKRGLA
Subjt:  SAIQLKRGLA

XP_023524533.1 uncharacterized protein LOC111788429 [Cucurbita pepo subsp. pepo]3.5e-10696.67Show/hide
Query:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKE+IEKGLMFVDATINS+ SKSTLIDSGATHNFIADQ
Subjt:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL LTIGKDP KMKAVNSEALPIVGVSK VPFKIG WTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGLA
        SAIQLKRGLA
Subjt:  SAIQLKRGLA

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]3.5e-10696.67Show/hide
Query:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKE+IEKGLMFVDATINS+ SKSTLIDSGATHNFIADQ
Subjt:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL LTIGKDP KMKAVNSEALPIVGVSK VPFKIG WTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGLA
        SAIQLKRGLA
Subjt:  SAIQLKRGLA

TrEMBL top hitse value%identityAlignment
A0A6J1D906 Reverse transcriptase5.7e-7870.81Show/hide
Query:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        LCKGPH+V+ CPHRA+LTALQ S+Q  NE  VET  +K+ED + PRM ALKFLSA+Q++V  PK   EKGLMFVDATIN   +KST++DSGATHNFI++Q
Subjt:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL+LTI KD  KMK VN EALPIVGVSKRV  K+G WTG +D VVVRMDDFDVVLGMEFL+EHKVIPMPLAKC+++T  +PTV+  SIKQPG +RMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGL
        SA+QLK+GL
Subjt:  SAIQLKRGL

A0A6J1DK29 uncharacterized protein LOC1110218295.7e-7870.81Show/hide
Query:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        LC+GPH+V+ CPHRA+LTALQ S+Q  NE  V T  +K+ED + PRMGALKFLSA+Q++V  PK   EKGLMFVDA IN  P+KS ++DSGATHNFI++Q
Subjt:  LCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVE-PKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EA RL+LTI KD  KMKAVNSEALPIVGVSKRV  K+G WTG  D VVVRMDDFDVVLGMEFL+EHKVIPMPLAKC+++T  +PTV+ ASIKQPG +RMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGL
        SA+QLK+GL
Subjt:  SAIQLKRGL

A0A6J1IA31 uncharacterized protein LOC1114714752.1e-8091.01Show/hide
Query:  VETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKR
        VET+LDKKED DNPRMGALKFLSALQRKVEPKE+IEKGLMFVDATINS+ SKSTLIDSGATHNFI DQEARRL LTIGKD  KMK VNSEALPIVGVSKR
Subjt:  VETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKR

Query:  VPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGLA
        VPFKIG WTGELDLVVVRMD  DV+LGMEFLLEHKVIPMPLAKCLVITDRNPTVIP SIKQPGNLRMISAI LKRGLA
Subjt:  VPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGLA

A0A6J1IEY4 uncharacterized protein LOC1114757331.6e-10492.86Show/hide
Query:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ
        MLCKGPHKVSYCPHR SLTALQVSIQESN+ARVET+LDKKED DNPRMGALKFLSALQRKVEPKE++EKGLMFVDATIN QP++STLIDSGATHNFIADQ
Subjt:  MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQ

Query:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
        EARRL LTIG+DP KMKA+NSEALPIVGVSKRVPFKIG WTGELDLVV RMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI
Subjt:  EARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMI

Query:  SAIQLKRGLA
        SAIQLKRGLA
Subjt:  SAIQLKRGLA

A0A6J1J429 uncharacterized protein LOC1114832365.0e-6683.33Show/hide
Query:  MGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLV
        MG LKFLSALQRKVEPKE++EKGLMFVDATINS+PS+STLIDSGATHNFIA+QEARRL LTIGKD RKMK VNSEALPIVGVSKRVPFKIG WTGELDLV
Subjt:  MGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIGKDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLV

Query:  VVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGL
        V RMD FDVVLGMEFLLEHKVIPM LAKCL+ITDRNPTVIPASIKQ        +I++K  L
Subjt:  VVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTGTAAAGGCCCCCACAAGGTATCCTACTGTCCTCATCGGGCCTCTCTCACTGCACTTCAAGTATCCATTCAAGAGAGCAATGAAGCAAGGGTCGAAACTTTGCT
AGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTCAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGGTAATAGAGAAAGGGCTCATGTTCG
TAGATGCCACAATAAACTCTCAACCGAGCAAGAGCACTCTGATAGACTCTGGAGCAACCCACAACTTCATTGCCGATCAAGAAGCCAGAAGATTGAGACTCACCATAGGA
AAAGACCCGAGGAAAATGAAAGCTGTCAACTCCGAGGCCTTGCCTATTGTGGGAGTTTCCAAGAGAGTCCCCTTCAAAATAGGGGTTTGGACTGGGGAGCTAGATCTTGT
TGTGGTTCGCATGGACGACTTCGACGTGGTACTTGGGATGGAGTTCCTCCTAGAGCACAAGGTCATCCCAATGCCATTGGCAAAATGCTTGGTGATCACCGACCGTAACC
CCACAGTAATACCTGCAAGCATCAAGCAACCAGGTAATCTTCGAATGATCTCGGCCATACAACTGAAAAGGGGACTTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTGTAAAGGCCCCCACAAGGTATCCTACTGTCCTCATCGGGCCTCTCTCACTGCACTTCAAGTATCCATTCAAGAGAGCAATGAAGCAAGGGTCGAAACTTTGCT
AGACAAGAAGGAAGATCACGACAACCCCCGAATGGGCGCACTCAAATTCTTGTCAGCCCTCCAACGGAAAGTCGAACCGAAGGAGGTAATAGAGAAAGGGCTCATGTTCG
TAGATGCCACAATAAACTCTCAACCGAGCAAGAGCACTCTGATAGACTCTGGAGCAACCCACAACTTCATTGCCGATCAAGAAGCCAGAAGATTGAGACTCACCATAGGA
AAAGACCCGAGGAAAATGAAAGCTGTCAACTCCGAGGCCTTGCCTATTGTGGGAGTTTCCAAGAGAGTCCCCTTCAAAATAGGGGTTTGGACTGGGGAGCTAGATCTTGT
TGTGGTTCGCATGGACGACTTCGACGTGGTACTTGGGATGGAGTTCCTCCTAGAGCACAAGGTCATCCCAATGCCATTGGCAAAATGCTTGGTGATCACCGACCGTAACC
CCACAGTAATACCTGCAAGCATCAAGCAACCAGGTAATCTTCGAATGATCTCGGCCATACAACTGAAAAGGGGACTTGCATGA
Protein sequenceShow/hide protein sequence
MLCKGPHKVSYCPHRASLTALQVSIQESNEARVETLLDKKEDHDNPRMGALKFLSALQRKVEPKEVIEKGLMFVDATINSQPSKSTLIDSGATHNFIADQEARRLRLTIG
KDPRKMKAVNSEALPIVGVSKRVPFKIGVWTGELDLVVVRMDDFDVVLGMEFLLEHKVIPMPLAKCLVITDRNPTVIPASIKQPGNLRMISAIQLKRGLA