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CmoCh05G012080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G012080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S24
Genome locationCmo_Chr05:9471089..9472944
RNA-Seq ExpressionCmoCh05G012080
SyntenyCmoCh05G012080
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e
IPR012678 - Ribosomal protein L23/L15e core domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU11599.1 hypothetical protein TSUD_345910 [Trifolium subterraneum]3.6e-2788.75Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        MADKAVTIRTRKF+TNRLLSRKQFV++  HPG+PNVS+NGLDTKVEKSRKQMKERKNRA KIRGVKKTKASDAAK GKKK
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

GAU21436.1 hypothetical protein TSUD_32670 [Trifolium subterraneum]5.0e-2995Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKNGLDTKVEKSRKQMKERKNR+KKIRGVKKTKA DAAK GKKK
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

KAF2307230.1 hypothetical protein GH714_025613 [Hevea brasiliensis]1.9e-2389.55Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKK
        MADKA+TIRTRKFMTNRLLSRKQF++DVLHPGRPNVSKNGLD+KVEKSRKQ+KERK RAKK+RGVKK
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKK

RYQ90869.1 hypothetical protein Ahy_B09g096832 isoform A [Arachis hypogaea]4.9e-2464.23Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK-------------------------------------------NGLDTKVEKSRKQMKERKN
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK                                           NGLDTKVEKSRKQMKERKN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK-------------------------------------------NGLDTKVEKSRKQMKERKN

Query:  RAKKIRGVKKTKASDAAKAGKKK
        RAKKIRGVKKTKASDAAKAGKKK
Subjt:  RAKKIRGVKKTKASDAAKAGKKK

XP_022946610.1 40S ribosomal protein S24-1 [Cucurbita moschata]2.4e-2358.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

TrEMBL top hitse value%identityAlignment
A0A0F7G7L7 40S ribosomal protein S241.2e-2358.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A2Z6LRX5 Uncharacterized protein2.4e-2995Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSKNGLDTKVEKSRKQMKERKNR+KKIRGVKKTKA DAAK GKKK
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

A0A444XMF2 Uncharacterized protein2.4e-2464.23Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK-------------------------------------------NGLDTKVEKSRKQMKERKN
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK                                           NGLDTKVEKSRKQMKERKN
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK-------------------------------------------NGLDTKVEKSRKQMKERKN

Query:  RAKKIRGVKKTKASDAAKAGKKK
        RAKKIRGVKKTKASDAAKAGKKK
Subjt:  RAKKIRGVKKTKASDAAKAGKKK

A0A6A6M0L4 Uncharacterized protein9.0e-2489.55Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKK
        MADKA+TIRTRKFMTNRLLSRKQF++DVLHPGRPNVSKNGLD+KVEKSRKQ+KERK RAKK+RGVKK
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKK

A0A6J1HN66 40S ribosomal protein S241.2e-2358.39Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
        KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

SwissProt top hitse value%identityAlignment
O13784 40S ribosomal protein S24-A7.1e-1065.96Show/hide
Query:  KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRK
        +AVTIRTRKFMTNRLL RKQ V+D+LHPG+ N+SKN L  K+ +  K
Subjt:  KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRK

P14249 40S ribosomal protein S242.1e-0937.9Show/hide
Query:  ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEK------------------------------------------------------
        AD AVTIRTRKF+TNRLL RKQ V+DV+HPG  NVSK+ L +K+ K                                                      
Subjt:  ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEK------------------------------------------------------

Query:  --SRKQMKERKNRAKKIRGVKKTK
           RKQ KE+KNR KK RGV+K+K
Subjt:  --SRKQMKERKNRAKKIRGVKKTK

Q8LC83 40S ribosomal protein S24-29.9e-2050Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q962Q6 40S ribosomal protein S244.2e-1038.17Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK--------------------------------------------------------NGLDTK
        M +   TIRTRKFMTNRLL+RKQ V DVLHPG+P VSK                                                        +GL  K
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK--------------------------------------------------------NGLDTK

Query:  VEKSRKQMKERKNRAKKIRGVKKTKASDAAK
           +RKQ KERKNR KK+RG KK+K   AAK
Subjt:  VEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Q9SS17 40S ribosomal protein S24-14.0e-2152.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein2.9e-2252.27Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGR NVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK

AT5G28060.1 Ribosomal protein S24e family protein7.0e-2150Show/hide
Query:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT
        MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGR NVSK                                                         NGLDT
Subjt:  MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSK---------------------------------------------------------NGLDT

Query:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK
        K+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Subjt:  KVEKSRKQMKERKNRAKKIRGVKKTKASDAAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGACAAGGCAGTCACCATCCGGACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGAAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCCAATGTCTC
AAAGAATGGACTCGACACCAAGGTAGAAAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTG
CCAAGGCAGGAAAGAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
CACAAATCAGGTAATCAGAGCAGCCGTTCCTCTGCCCCTTCGCCTTCTTTGAGCTTTTCAACCTCTTCGGAGCACCTCCAGCCATGGCGGACAAGGCAGTCACCATCCGG
ACCAGGAAGTTCATGACCAACAGGCTCCTATCCAGAAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCCAATGTCTCAAAGAATGGACTCGACACCAAGGTAGA
AAAATCAAGAAAGCAAATGAAGGAAAGGAAGAACAGGGCAAAGAAAATCCGCGGAGTCAAGAAGACCAAGGCTTCAGATGCTGCCAAGGCAGGAAAGAAAAAATGAGATT
GATTGCTGGAATTTTGTACCCATCACCAAGGATTATCTGCAGAATCGTCTTGATCTCTTTTTAATAGTTTCCTTTAGTTTTGTTTTTACTCCTAGATCAAATTATGTTAA
TCAGTATTTTTGGTTGTTGATTACTAGTGATATGAAAACTTGGTTCTTTGCAGAGGACAAAATTTTTGACGTTACGGGAAATATACATTTCCTTGTGTTTTTTTACCATC
ATTTGAGGCTTATCGTTGGTAGATTATGAAAAATGATTTCTGGGATGTTCC
Protein sequenceShow/hide protein sequence
MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK