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CmoCh05G012290 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G012290
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpathogenesis-related protein PR-4-like
Genome locationCmo_Chr05:9604878..9606195
RNA-Seq ExpressionCmoCh05G012290
SyntenyCmoCh05G012290
Gene Ontology termsGO:0042742 - defense response to bacterium (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0004540 - ribonuclease activity (molecular function)
InterPro domainsIPR001153 - Barwin domain
IPR018226 - Barwin, conserved site
IPR036908 - RlpA-like domain superfamily
IPR044301 - Pathogenesis-related protein-4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599313.1 Wound-induced protein WIN1, partial [Cucurbita argyrosperma subsp. sororia]4.2e-7495.83Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQS SNVRATFNLYNAPEINWD NAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLL  VTNTETGAQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
         VRIVDQCNNGGLDLDVGVF+SLDTDGNGNANGFLTVDYDFVNC
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

KAG7030310.1 hypothetical protein SDJN02_08657, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-6990.97Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLL           +
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        +VRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

XP_022946139.1 pathogenesis-related protein PR-4-like [Cucurbita moschata]4.4e-7698.61Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLL  VTNTETGAQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

XP_022999104.1 pathogenesis-related protein PR-4-like [Cucurbita maxima]2.7e-7395.14Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQS SNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQG+DSCGLCLL  VTNTETGAQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
         VRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFL VDYDFV C
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

XP_023521170.1 pathogenesis-related protein PR-4-like [Cucurbita pepo subsp. pepo]6.6e-7293.06Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITL+CLC VMLSKAQS SNVRATFN YNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLL  VTNTET AQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
         VRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLT++YDFVNC
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

TrEMBL top hitse value%identityAlignment
A0A0A0LG74 Barwin domain-containing protein2.6e-5886.51Show/hide
Query:  LSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVG
        +SKAQS SNVRATFNLYNAP+INWDLNAVSAFCSTWDA+QPLEWRSQYGWTAFCGP+GP G+ SCGLCLL  VTN +TGAQQ VRIVDQC+NGGLDLDVG
Subjt:  LSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVG

Query:  VFQSLDTDGNGNANGFLTVDYDFVNC
        VFQSLDTDGNG ANGFLT++YDFVNC
Subjt:  VFQSLDTDGNGNANGFLTVDYDFVNC

A0A5D3D4F5 Pathogenesis-related protein PR-4-like1.2e-6381.38Show/hide
Query:  METKGLM-LITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQ
        MET+ ++  + L C CLVM+SKAQS SNVRATFNLYNAP+INWDLNAVSAFCSTWDA++PLEWRSQYGWTAFCGP+GP G+DSCGLCLL  VTN +TG Q
Subjt:  METKGLM-LITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQ

Query:  QIVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        + VRIVDQC+NGGLDLDVGVFQSLDTDGNGNANGFLTV+YDFVNC
Subjt:  QIVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

A0A6J1CMK0 pathogenesis-related protein PR-4-like2.6e-6179.59Show/hide
Query:  METKGLM---LITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETG
        METK L    +I L C  ++ +S+ QS SNVRAT+NLYNAP+INWDLNAVSAFC+TWDA+QPLEWRSQYGWTAFCGPVGP G+DSCG CLL  VTNTETG
Subjt:  METKGLM---LITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETG

Query:  AQQIVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        AQQ VRIVDQC+NGGLDLDVGVFQSLDT+GNGNANGFLTV+YDFVNC
Subjt:  AQQIVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

A0A6J1G2Y5 pathogenesis-related protein PR-4-like2.1e-7698.61Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLL  VTNTETGAQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

A0A6J1KG47 pathogenesis-related protein PR-4-like1.3e-7395.14Show/hide
Query:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ
        METKGLMLITLSCLCLVMLSKAQS SNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQG+DSCGLCLL  VTNTETGAQQ
Subjt:  METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQ

Query:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
         VRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFL VDYDFV C
Subjt:  IVRIVDQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

SwissProt top hitse value%identityAlignment
P09761 Wound-induced protein WIN14.1e-4870.25Show/hide
Query:  SVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQSL
        S  NVRAT+++YN   + WDLNAVSA+CSTWDA++PL WR +YGWTAFCGPVGP+G DSCG CL  RVTNT TGAQ  VRIVDQC+NGGLDLDV VF+ +
Subjt:  SVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQSL

Query:  DTDGNGNANGFLTVDYDFVNC
        DTDGNGN  G L V+Y FV+C
Subjt:  DTDGNGNANGFLTVDYDFVNC

P09762 Wound-induced protein WIN26.9e-4870.25Show/hide
Query:  SVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQSL
        S  NVRAT+++YN   + WDLNAVSA+CSTWDA++P  WRS+YGWTAFCGPVGP+G DSCG CL  RVTNT TGAQ  VRIVDQC+NGGLDLD+ VFQ +
Subjt:  SVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQSL

Query:  DTDGNGNANGFLTVDYDFVNC
        DTDG GN  G L V+Y FVNC
Subjt:  DTDGNGNANGFLTVDYDFVNC

P29062 Pathogenesis-related protein PR-4A1.5e-4764.03Show/hide
Query:  MLITLSCLCLVM-LSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIV
        + + L  + +VM ++ AQS +NVR+T++LYN   INWDL A SAFC+TWDAD+PL WR +YGWTAFCGP GP+G+DSCG CL  RVTNT TG Q  VRIV
Subjt:  MLITLSCLCLVM-LSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIV

Query:  DQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC
        DQC+NGGLDLDV VF  LDT+G G   G LTV+Y+FVNC
Subjt:  DQCNNGGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC

P29063 Pathogenesis-related protein PR-4B3.4e-4765.89Show/hide
Query:  LVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDL
        ++ ++ AQS +NVR+T++LYN   INWDL A SAFC+TWDAD+PL WR +YGWTAFCGP GP+G+DSCG CL  RVTNT TG Q  VRIVDQC+NGGLDL
Subjt:  LVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDL

Query:  DVGVFQSLDTDGNGNANGFLTVDYDFVNC
        DV VF  LDT+G G   G L V+Y+FVNC
Subjt:  DVGVFQSLDTDGNGNANGFLTVDYDFVNC

P32045 Pathogenesis-related protein P21.4e-4564.34Show/hide
Query:  LVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDL
        ++ ++ AQS +NVRAT++LYN   INWDL   S +C+TWDAD+PLEWR +YGWTAFCGP GP G+ SCG CL  RVTNT TG Q+ VRIVDQC NGGLDL
Subjt:  LVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDL

Query:  DVGVFQSLDTDGNGNANGFLTVDYDFVNC
        DV VF  LDT+G G   G L V+Y+FVNC
Subjt:  DVGVFQSLDTDGNGNANGFLTVDYDFVNC

Arabidopsis top hitse value%identityAlignment
AT3G04720.1 pathogenesis-related 41.6e-4465.57Show/hide
Query:  QSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQS
        +S SNVRAT++ YN  + NWDL AVSA+CSTWDAD+P  WRS+YGWTAFCGP GP+G+ SCG CL  RV NT T A   VRIVDQC+NGGLDLDV +F  
Subjt:  QSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNNGGLDLDVGVFQS

Query:  LDTDGNGNANGFLTVDYDFVNC
        +DTDG G   G L VDY FV+C
Subjt:  LDTDGNGNANGFLTVDYDFVNC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACAAAGGGTTTGATGCTGATAACGTTGTCGTGTCTATGTCTTGTAATGTTGTCCAAAGCTCAAAGTGTGAGCAACGTGAGGGCAACATTTAACTTGTACAATGC
CCCCGAAATCAATTGGGACTTGAACGCTGTGAGTGCATTTTGTTCCACATGGGATGCCGACCAGCCTTTGGAGTGGCGCAGCCAATATGGATGGACTGCCTTTTGTGGCC
CCGTTGGACCTCAAGGCGAGGACTCTTGTGGCCTATGCTTACTGGTACGAGTGACTAACACGGAAACAGGCGCTCAACAAATCGTAAGAATTGTGGATCAATGTAACAAC
GGAGGTCTAGATTTAGACGTCGGAGTGTTTCAAAGTCTCGACACGGATGGAAATGGCAATGCTAATGGCTTTCTCACAGTCGACTATGATTTTGTGAATTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGACAAAGGGTTTGATGCTGATAACGTTGTCGTGTCTATGTCTTGTAATGTTGTCCAAAGCTCAAAGTGTGAGCAACGTGAGGGCAACATTTAACTTGTACAATGC
CCCCGAAATCAATTGGGACTTGAACGCTGTGAGTGCATTTTGTTCCACATGGGATGCCGACCAGCCTTTGGAGTGGCGCAGCCAATATGGATGGACTGCCTTTTGTGGCC
CCGTTGGACCTCAAGGCGAGGACTCTTGTGGCCTATGCTTACTGGTACGAGTGACTAACACGGAAACAGGCGCTCAACAAATCGTAAGAATTGTGGATCAATGTAACAAC
GGAGGTCTAGATTTAGACGTCGGAGTGTTTCAAAGTCTCGACACGGATGGAAATGGCAATGCTAATGGCTTTCTCACAGTCGACTATGATTTTGTGAATTGTTGA
Protein sequenceShow/hide protein sequence
METKGLMLITLSCLCLVMLSKAQSVSNVRATFNLYNAPEINWDLNAVSAFCSTWDADQPLEWRSQYGWTAFCGPVGPQGEDSCGLCLLVRVTNTETGAQQIVRIVDQCNN
GGLDLDVGVFQSLDTDGNGNANGFLTVDYDFVNC