; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G012300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G012300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPSII 6.1 kDa protein
Genome locationCmo_Chr05:9607118..9608541
RNA-Seq ExpressionCmoCh05G012300
SyntenyCmoCh05G012300
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009806 - Photosystem II PsbW, class 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022946133.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata]6.8e-60100Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

XP_022999105.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita maxima]5.5e-5492.31Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA +L KMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVGMFGLIWSLYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

XP_023521165.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]4.1e-5796.15Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMVLPPPLMAAR+L KMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVG+FGLIW+LYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

XP_023521171.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo]1.8e-5796.92Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMVLPPPLMAAR+L KMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVG+FGLIWSLYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

XP_038890119.1 photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]5.2e-4478.2Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARK---LLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS SR+LLKGSS VLP P +AA +   L KMKKG IKC+VEEK EGK+SEE +VSGT+A VAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARK---LLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        LGWIL G+F LIW+LYFVYASSLDE +DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

TrEMBL top hitse value%identityAlignment
A0A1S3C2B0 PSII 6.1 kDa protein1.6e-4378.2Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARK---LLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LL  SR+LLKGSS +LP   MAA +   L KMK G IKCKVEEK EGK+SEE MV GTVA VAMA +AAAGPAVALVDER+STEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARK---LLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        LGWIL GMFGLIW+LYFVYASSLDE +DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

A0A6J1FBR0 PSII 6.1 kDa protein6.2e-4375.19Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS S I LKGS  +LPPPLMAA +L    KMKKG IKCK+EEK+EGKRS+E ++SGTVA +A   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        LGWIL GMFG IW+LYFVYASSL+E +DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

A0A6J1G2Y6 PSII 6.1 kDa protein3.3e-60100Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

A0A6J1HLU7 PSII 6.1 kDa protein7.6e-4173.68Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL
        MAS+LLS S I LKGS  +LPPPLMAA +L    K KKG IKC++EEK+E K S+E M+SGTVA VA   +A AGPAVALVDERLSTEGTGLPFGLSNNL
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKL---LKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNL

Query:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        LGWIL GMFG IW+LYFVYASSL+E +DSGLSL
Subjt:  LGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

A0A6J1KED2 PSII 6.1 kDa protein2.7e-5492.31Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
        MASSLLSPSRILLKGSSM+LP PLMAA +L KMK+ AIKCK EEKREGKRSEERMVSGTVA VAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGW

Query:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        ILVGMFGLIWSLYFVYASSLDE DDSGLSL
Subjt:  ILVGMFGLIWSLYFVYASSLDEGDDSGLSL

SwissProt top hitse value%identityAlignment
Q39194 Photosystem II reaction center W protein, chloroplastic1.5e-2248.89Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSN
        MAS   S S +     +++L P +  +  +L +     KKG ++C +E K +G  S         AT A+ T   + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        NLLGWIL G+FGLIW+ +FVY SSL+E ++SGLSL
Subjt:  NLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

Q41387 Photosystem II reaction center W protein, chloroplastic3.8e-2145Show/hide
Query:  AFLARKMASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEK----REGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLP
        A +    ++SL++ + ++      V   P++    + K  K  + C +E K         + + M +  +A  A AT+  + PA+ALVDER+STEGTGLP
Subjt:  AFLARKMASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEK----REGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLP

Query:  FGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        FGLSNNLLGWIL G+FGLIW+LYFVYAS L+E ++SGLSL
Subjt:  FGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL

Q5ZBY9 Photosystem II reaction center W protein, chloroplastic3.9e-1865.28Show/hide
Query:  VSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSG
        V G  A++ +A  A A PA+ALVDER+STEGTGL  GLSNNLLGWIL+G+FGLIWSLY +Y S L+E ++SG
Subjt:  VSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSG

Q9SPI9 Photosystem II reaction center W protein, chloroplastic8.7e-1040Show/hide
Query:  IKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLD--EGDDSGLSL
        + CK    R     +  M+S   AT+      AA PA ALVDER++ +GTG PFG+++ +LGW+L+G+FG +W+++F+    L   E  D GL L
Subjt:  IKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLD--EGDDSGLSL

Arabidopsis top hitse value%identityAlignment
AT2G30570.1 photosystem II reaction center W1.1e-2348.89Show/hide
Query:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSN
        MAS   S S +     +++L P +  +  +L +     KKG ++C +E K +G  S         AT A+ T   + PA+ALVDER+STEGTGLPFGLSN
Subjt:  MASSLLSPSRILLKGSSMVLPPPLMAARKLLKM-----KKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGPAVALVDERLSTEGTGLPFGLSN

Query:  NLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL
        NLLGWIL G+FGLIW+ +FVY SSL+E ++SGLSL
Subjt:  NLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGATTGAGCAAAGGGAACTATTTGGGTGTTCACATATCCAAATTATGTGGTGCATAAACAAGAACACCTTTCCCCTCAACCTCTACCGGGCTTTTTTGGCCAGAAA
AATGGCGTCCTCTCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGGTTCTTCCACCGCCATTAATGGCTGCTCGCAAGTTACTCAAGATGAAGAAGGGAG
CGATAAAGTGCAAGGTGGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTAGCGACGGTGGCGATGGCTACAATGGCAGCGGCGGGTCCG
GCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTTGGTTTAATTTG
GTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGGTGACGACTCTGGTTTGTCACTCTGA
mRNA sequenceShow/hide mRNA sequence
GTATGGTGTCACAATTGCACTCTTACATAACGTTTGTAAGCGATTGTGCAGCACTCATTCTCACCCAGCAACTCCGAGTAGGAGGAATTGATGGCTAGTTGCATCCCTTT
ATAATACATTTTGAGGCATTTATGATTTTGAGGAAATGGAAACTATACCAGCATGACCGTGACCAATCGGTGTCTCCATTCTTTAGTTGGGCTGAACACGTGGATAGCAA
AGATTGGATGAATGAGGATTGAGCAAAGGGAACTATTTGGGTGTTCACATATCCAAATTATGTGGTGCATAAACAAGAACACCTTTCCCCTCAACCTCTACCGGGCTTTT
TTGGCCAGAAAAATGGCGTCCTCTCTGCTTTCTCCTTCCAGGATCTTACTCAAAGGATCATCCATGGTTCTTCCACCGCCATTAATGGCTGCTCGCAAGTTACTCAAGAT
GAAGAAGGGAGCGATAAAGTGCAAGGTGGAGGAGAAGCGAGAAGGGAAGAGGTCAGAAGAAAGGATGGTTTCGGGGACGGTAGCGACGGTGGCGATGGCTACAATGGCAG
CGGCGGGTCCGGCAGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGGACAGGGCTGCCTTTTGGTTTAAGCAACAACCTGCTAGGGTGGATTCTAGTTGGGATGTTT
GGTTTAATTTGGTCTCTATACTTTGTTTATGCTTCGTCCTTAGATGAAGGTGACGACTCTGGTTTGTCACTCTGAATCAATCACCACATTTTAATCAAAGTTATGGTTAG
TAAAAAAAAACACGACTATTATGTAACGACTCCTTGTTGTAGACCTTCGAGAAAATCGAAGGGAGAGTGAGACAACGATTTGATAGAATCAAGGTGTAACAGCTTAAGCT
CACCGCTAATATATATTGTCCGCTTTAGCCCGTAC
Protein sequenceShow/hide protein sequence
MRIEQRELFGCSHIQIMWCINKNTFPLNLYRAFLARKMASSLLSPSRILLKGSSMVLPPPLMAARKLLKMKKGAIKCKVEEKREGKRSEERMVSGTVATVAMATMAAAGP
AVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYASSLDEGDDSGLSL