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CmoCh05G013190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G013190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAlba domain-containing protein
Genome locationCmo_Chr05:10222825..10225962
RNA-Seq ExpressionCmoCh05G013190
SyntenyCmoCh05G013190
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599408.1 hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia]1.4e-68100Show/hide
Query:  VLGFLRGEGRRSLMEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIK
        VLGFLRGEGRRSLMEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIK
Subjt:  VLGFLRGEGRRSLMEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIK

Query:  DDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS
        DDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS
Subjt:  DDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS

XP_008457716.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]2.7e-5693.89Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEER E GDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

XP_022946216.1 uncharacterized protein At2g34160-like [Cucurbita moschata]6.2e-61100Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEERAETGDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

XP_022999418.1 uncharacterized protein At2g34160-like [Cucurbita maxima]1.8e-6099.24Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EI LGKTENFDELMAAAAEERAETGDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

XP_023547053.1 uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]1.8e-6099.24Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGVDS+NLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEERAETGDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

TrEMBL top hitse value%identityAlignment
A0A1S3C651 uncharacterized protein At2g34160-like1.3e-5693.89Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEER E GDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

A0A5D3BH52 DNA/RNA-binding protein Alba-like protein1.3e-5693.89Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+S+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQHD VELSALGMAIATVVTVAEILKNNGLAVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEER E GDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

A0A6J1CNW3 uncharacterized protein At2g34160-like1.1e-5591.6Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGV+S+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIATVVTVAEILKNNGL VEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEER +TGD DEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

A0A6J1G312 uncharacterized protein At2g34160-like3.0e-61100Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EILLGKTENFDELMAAAAEERAETGDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

A0A6J1KJN4 uncharacterized protein At2g34160-like8.7e-6199.24Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EI LGKTENFDELMAAAAEERAETGDADEQS
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341609.0e-4779.39Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEI +GV++MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ++ VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EI L K+E FDELMAAA EE+ E  +A  Q+
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein2.0e-4981.68Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEI EGV++MNL  D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+  VELSALGMAIATVVTVAEILKNNG AVEKKI TSTVDIKDDSRGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EI L K+E FDELMAAA EE+ E  +A EQ+
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

AT2G34160.1 Alba DNA/RNA-binding protein6.4e-4879.39Show/hide
Query:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI
        MEEI +GV++MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ++ VELSALGMAIATVVTV EILKNNG AVEKKI TSTVDIKDD+RGRPVQKAKI
Subjt:  MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKI

Query:  EILLGKTENFDELMAAAAEERAETGDADEQS
        EI L K+E FDELMAAA EE+ E  +A  Q+
Subjt:  EILLGKTENFDELMAAAAEERAETGDADEQS

AT3G04620.1 Alba DNA/RNA-binding protein2.1e-3564.66Show/hide
Query:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMA
        +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH+ VELSALGMAI TVVT++EILKNNGLA EKK+ TSTV +KD+++G+ VQKAKIEI+LGK++ FD L+ 
Subjt:  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNGLAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMA

Query:  AAAEERAETGDADEQS
             +    +A  ++
Subjt:  AAAEERAETGDADEQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGCCAGTGAAGACGTTAGGCCACGAAGGAGTGTGAGATCCCACATCGGGTTTTGGGTTTTGTGTTGCAGTGTTTTAGGGTTTTTGCGAGGTGAAGGAAGGAGGAG
CTTGATGGAAGAAATTGTAGAAGGCGTGGATTCCATGAACTTGGGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCTTTGTTCTTCTATG
TCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGTGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACAGTTGTCACAGTTGCCGAAATTTTGAAAAACAATGGA
CTGGCTGTTGAGAAGAAGATCACAACCTCAACTGTTGATATCAAGGACGACTCAAGAGGCCGACCTGTCCAGAAGGCTAAGATCGAGATCTTGCTGGGTAAAACCGAAAA
CTTCGATGAATTGATGGCAGCTGCTGCCGAGGAAAGGGCGGAGACAGGTGATGCAGATGAGCAAAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGCCAGTGAAGACGTTAGGCCACGAAGGAGTGTGAGATCCCACATCGGGTTTTGGGTTTTGTGTTGCAGTGTTTTAGGGTTTTTGCGAGGTGAAGGAAGGAGGAG
CTTGATGGAAGAAATTGTAGAAGGCGTGGATTCCATGAACTTGGGTTCCGATTCGTATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCTTTGTTCTTCTATG
TCAATCTCGCTAAGAGGTACATGCAGCAGCATGATGTGGTCGAACTTTCTGCTCTTGGAATGGCAATTGCCACAGTTGTCACAGTTGCCGAAATTTTGAAAAACAATGGA
CTGGCTGTTGAGAAGAAGATCACAACCTCAACTGTTGATATCAAGGACGACTCAAGAGGCCGACCTGTCCAGAAGGCTAAGATCGAGATCTTGCTGGGTAAAACCGAAAA
CTTCGATGAATTGATGGCAGCTGCTGCCGAGGAAAGGGCGGAGACAGGTGATGCAGATGAGCAAAGTTAAAAGATGAATTACCATTAGCTGTATCTTTTATTTCTGCTAT
AATTTTTGTTTGTGATGAACCCGATTCTCCATCATTTATTGTAGCTCTCTAGGGGTACTTGAGGAGTTAAGGCACTATTTTTCATAGTCAGTTTGTTCATAGGTTTCGTT
TTAGAGATCTTCAAAGTTTCTTTTGGAGTCTTTTGCCATATAGAAAACCAATTTTTGCATCGTTATCTTCTGCTTCCAATCTTTTGGATTTTAGAAGAAACTCTAATTTG
TTAACCCTAATTAGTCCGTTTGAAGCACGTGCACGAAAAAACTTAAGGAAAAAG
Protein sequenceShow/hide protein sequence
MSASEDVRPRRSVRSHIGFWVLCCSVLGFLRGEGRRSLMEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIATVVTVAEILKNNG
LAVEKKITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEERAETGDADEQS