; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh05G013310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G013310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRRM domain-containing protein
Genome locationCmo_Chr05:10316484..10319793
RNA-Seq ExpressionCmoCh05G013310
SyntenyCmoCh05G013310
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK10694.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]7.0e-16088.15Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

XP_022946346.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata]4.8e-185100Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

XP_022999196.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]1.4e-18499.71Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHD DWNGGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]1.4e-18499.71Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKER YEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]3.1e-16088.44Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGR+IEGRVVRVNGV +R GGRFGRE NRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDV+WERDRDRGRDY+HDRYR RGRNNDWSR+RDRSREHDLDKER YEHSQD D PKD LLDR+PELEK  K NE+  DLKL+H QD EK+H ADW GGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDN DDY+KSL +DR+QLSRRDNGL  EGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLV+ELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A1S3C6W1 zinc finger CCCH domain-containing protein 253.7e-15987.57Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

A0A5A7V7D5 Zinc finger CCCH domain-containing protein 253.7e-15987.57Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDN L IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 253.4e-16088.15Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD E
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDY+HDRYR RGRNNDWSR+ DRSREHDLDKER Y+HSQDRDLPKD  LDR+PELEK  K NE+  DLKL+H QDWEKDH AD +GGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GID TDDYDKSL +DRDQ+ RRDNGL IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa2.3e-185100Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

A0A6J1KCE4 U1 small nuclear ribonucleoprotein 70 kDa6.8e-18599.71Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG
        RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHD DWNGGG
Subjt:  RDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGG

Query:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
        GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR
Subjt:  GIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKR

Query:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
        SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
Subjt:  SSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B5.1e-1235.71Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN    + GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------

Query:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR
         G E   F   R  +W RD     D + +R+R     R R  D    RDR  + DL++ER  E   DR
Subjt:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR

Q18409 Probable splicing factor, arginine/serine-rich 63.9e-1237.35Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV--------------NGVNTRGGGRFG
        D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++ +DG  I G   RV               G   RGGG  G
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRV--------------NGVNTRGGGRFG

Query:  RESNRFDVERDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHS---QDRD
        R+ + +  +R  +  R RDRGRD   DR R R R+    R RDRSRE   ++ER    S   Q+RD
Subjt:  RESNRFDVERDVNWERDRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHS---QDRD

Q28IQ9 Cold-inducible RNA-binding protein9.2e-1440.82Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-----NTRGGGRFGRESNR
        D+  ++VGGL ++ TE+SL ++F  YG V  V ++ DR S R + +GFVTF NP  A DA+  M+G++++GR +RV+       + RGG R G    R
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDR-STRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGV-----NTRGGGRFGRESNR

Q66II8 U1 small nuclear ribonucleoprotein 70 kDa4.0e-0932.73Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR----------GGGRFG-
        D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    A K  DG+ I+GR V V+    R          GGG  G 
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR----------GGGRFG-

Query:  ---------RESNRFDV----ERDVNWERDRD-RGRDYEHDRYRRRGRNNDWS-RERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQ
                 R S R D     ERD + ER+RD R R  E D+ R R R+     R R RSRE + +++R  E S+D+D  KD   D++ E +K     ++
Subjt:  ---------RESNRFDV----ERDVNWERDRD-RGRDYEHDRYRRRGRNNDWS-RERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQ

Query:  ERDLK-LSHGQDWEKDHDAD
        +RD K  S  ++ +++ D D
Subjt:  ERDLK-LSHGQDWEKDHDAD

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial8.4e-1549.43Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR-GGGRFG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN  N R  GG FG
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR-GGGRFG

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.6e-1335.71Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN    + GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------

Query:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR
         G E   F   R  +W RD     D + +R+R     R R  D    RDR  + DL++ER  E   DR
Subjt:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain3.6e-1335.71Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAIK M GR +  +V+ VN    + GG                
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGR---------------

Query:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR
         G E   F   R  +W RD     D + +R+R     R R  D    RDR  + DL++ER  E   DR
Subjt:  FGRESNRFDVERDVNWERDRDRGRDYEHDRYR----RRGRNNDWSRERDRSREHDLDKERVYEHSQDR

AT3G47120.1 RNA recognition motif (RRM)-containing protein1.1e-0422.77Show/hide
Query:  IYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWER
        +YVGG+P+D TE  L  +F  YG +V V +I D+ T + K + F+ + + RS I A+ +++G  + GR ++V+       G + +     +  R  N E 
Subjt:  IYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWER

Query:  ----------DRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWN
                  +  RG   +     +R  N  W  E DRS + D DK R     + R + +          +    +++++R      G   E+D  + W+
Subjt:  ----------DRDRGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWN

Query:  ---------GGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSD-----DYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVEL
                 GG    N  D+   +  +      R +G A  GR       D  D        +++KEQ           R+   +I+    +KG    + 
Subjt:  ---------GGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSD-----DYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVEL

Query:  QKK
        +K+
Subjt:  QKK

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.3e-5845.43Show/hide
Query:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE
        MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA DAI+DMDG++I GR VRVN V TR GGR      R  ++
Subjt:  MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVE

Query:  RDVNWERDRDRGRD--YEHDRYRRRGRNNDWSRERDRSREHD-LDKERVYEHSQDRDLPKD-ILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADW
            W+R  DR  D  YE DRY  R R  D  R +DR ++H  ++KER YEHS D +   D  ++DRN   E++   +E           DW  D     
Subjt:  RDVNWERDRDRGRD--YEHDRYRRRGRNNDWSRERDRSREHD-LDKERVYEHSQDRDLPKD-ILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADW

Query:  NGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALIS
        N G GI+ T  ++      R Q ++R++   ++G   R+  S+SS D  H++KE LE   +  E LR E+  +EER   K  +  ELQKK+K+LED LI+
Subjt:  NGGGGIDNTDDYDKSLGSDRDQLSRRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALIS

Query:  AKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG
         KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Subjt:  AKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 35.9e-1649.43Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR-GGGRFG
        S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+ +DGR + GRVV+VN  N R  GG FG
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTR-GGGRFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCAACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGGGCCGTCGTCGCTGTTAA
GATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTACAAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAG
GGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTAGAGAAAGTAATCGGTTTGATGTAGAGAGAGATGTGAATTGGGAGAGGGATAGAGAT
CGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGACTGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGTATA
TGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCCTGAGTTGGAAAAAATTCCGAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCC
ATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCATTGACAACACTGATGATTATGATAAAAGCCTTGGTAGTGATAGAGATCAACTCTCT
AGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGA
AAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGAGAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGT
TGATCAGTGCAAAGAAACGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCCATAAAAGCTTTCTTTTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAA
GAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGA
mRNA sequenceShow/hide mRNA sequence
AATCGTGTTCTTCCCCACTTTCTTCATTTCCCTGAGATTGGATTTTCGCGGTGGTCATGACGGTGGACGACGATAGCTCGATATACGTCGGTGGCCTTCCTTATGACGCA
ACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGGGCCGTCGTCGCTGTTAAGATTATCAATGATCGTAGTACTAGAGGAAAGTGCTATGGGTTTGTTACCTTTAC
AAACCCTCGATCTGCTATTGATGCCATCAAAGACATGGATGGAAGGACTATTGAAGGGCGAGTTGTCAGAGTTAATGGAGTGAATACTAGAGGTGGTGGAAGGTTTGGTA
GAGAAAGTAATCGGTTTGATGTAGAGAGAGATGTGAATTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGAGCATGACAGATATCGTCGTAGAGGTAGAAATAATGAC
TGGTCTAGAGAGCGTGATCGGTCTCGAGAACATGATCTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCAAAGGATATATTGTTAGATAGGAATCC
TGAGTTGGAAAAAATTCCGAAGGCTAATGAGCAGGAACGTGATTTGAAGTTGAGCCATGGTCAAGATTGGGAAAAGGATCACGATGCAGATTGGAATGGAGGTGGAGGCA
TTGACAACACTGATGATTATGATAAAAGCCTTGGTAGTGATAGAGATCAACTCTCTAGGAGAGATAACGGTCTTGCGATTGAAGGTCGAACTGCTCGGGAACTTTCATCT
GATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTTGAAGAACTTAGAAAAGAGATTTCTCAAATAGAGGAGAGGACTGGAGA
GAAGGGTAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCGTTGATCAGTGCAAAGAAACGCTCTTCATTCCGTCAGATGCAGCTGACCAAGCTCC
ATAAAAGCTTTCTTTTAGTGAAGGATTATTCTGAGAGACTTAAAATCAGTGAACAAGAACTTCAGGCTCTAGTTGAATCAACTGCAATAGAAAGTGATGTTGGATGAATT
ATGAAGTTCCAGCTAATTGCAGTTCCAGTCATAAGCTGAAAAGGCTGCACTGGTCGGGGTAGTCGTCGTCTTCTGTTGATACTGATGACAAGTTGTGATGTAGAATTTGT
TTGTAACTTAACTTCTCCCAAGATTAAGCTGTCCCTCTCTTTCATGGTACGTTCACAATCAACTATGAACATGTTTTTACTTGCCATTGGCATCTTCAGAGGTTCATTGC
TTCACTGTTGTCAAGTTAGGTAGGTAAAGATATATGCTGAAAATTAATTCCAACTTCCAAATAGTTTTTCCAGCTTGCCTGAAGTTCCTTCCCATGAATGCAAATTTGAA
GTTTAGGTTGTAATCCTTTTCTAAGAACATTATGACATATTTCAAACAGACTTCCGTATCGTTATATCATTAAATTTCTAC
Protein sequenceShow/hide protein sequence
MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRD
RGRDYEHDRYRRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDLKLSHGQDWEKDHDADWNGGGGIDNTDDYDKSLGSDRDQLS
RRDNGLAIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKKAKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQ
ELQALVESTAIESDVG