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CmoCh05G013510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh05G013510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationCmo_Chr05:10478843..10486145
RNA-Seq ExpressionCmoCh05G013510
SyntenyCmoCh05G013510
Gene Ontology termsGO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599455.1 hypothetical protein SDJN03_09233, partial [Cucurbita argyrosperma subsp. sororia]1.2e-45100Show/hide
Query:  MSISLQFKLSGKKSTMASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIES
        MSISLQFKLSGKKSTMASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIES
Subjt:  MSISLQFKLSGKKSTMASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIES

Query:  QGWGLVPQG
        QGWGLVPQG
Subjt:  QGWGLVPQG

KAG7030432.1 hypothetical protein SDJN02_08779, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-45100Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDI
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDI
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGNPANDI

Query:  QVRTG
        QVRTG
Subjt:  QVRTG

XP_022946234.1 uncharacterized protein LOC111450380 [Cucurbita moschata]4.2e-38100Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

XP_022999549.1 uncharacterized protein LOC111493876 [Cucurbita maxima]4.6e-3797.87Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

XP_023547330.1 uncharacterized protein LOC111806185 [Cucurbita pepo subsp. pepo]9.4e-3898.94Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

TrEMBL top hitse value%identityAlignment
A0A0A0LKT5 Uncharacterized protein5.7e-3389.36Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASL+AVSRLSSRLQSLAPK NKRS SSEL  FKS CQSQPSAASTSR+ CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

A0A5A7V7B3 Protein NUCLEAR FUSION DEFECTIVE 61.1e-3187.23Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASL+AVSRLSSRLQSL+PK NKRS SSEL   KS CQSQPSAASTSR+ CTSRLP+ELSSQGSLMPLHSAIAAARLISSL+IESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

A0A6J1DYI4 uncharacterized protein LOC1110242171.7e-3287.23Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASL+AVSRLSSRL SLAPKL K+ PSSE SP KS+CQS+PSAASTSR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL+IES+GWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

A0A6J1G399 uncharacterized protein LOC1114503802.0e-38100Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

A0A6J1KDE2 uncharacterized protein LOC1114938762.2e-3797.87Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKS+CQSQPSAAS SRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein8.2e-1658.33Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+ELS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

AT1G55205.2 unknown protein8.2e-1658.33Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MAS   + RLSS++ SL  KL+K +   SS  SP KS   S PS+A TSR++ + RLP+ELS   S++PLHSAIA+ARLISSLS+ES+ WGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

AT3G13674.1 unknown protein4.1e-1555.21Show/hide
Query:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        MAS R + R SSRL+SL   L+ ++   SS  SP KSA    PS+A++ R++ +SRLP+ELS   S++PLHSAIA++RL+SSLS+ES+ WGLVPQG
Subjt:  MASLRAVSRLSSRLQSLAPKLNKRSP--SSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

AT4G39300.1 unknown protein6.5e-0539.36Show/hide
Query:  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG
        ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L S  +++PLHSA+A+ARL SS++ +S  W L+ QG
Subjt:  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQG

AT4G39300.2 unknown protein2.5e-0438.71Show/hide
Query:  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ
        ++L A SR L SR +++  K     P++  SPF S  QS P A         SR+   L S  +++PLHSA+A+ARL SS++ +S  W L+ Q
Subjt:  ASLRAVSR-LSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATTTCGTTACAGTTCAAGCTTAGTGGAAAGAAGTCTACAATGGCGTCCTTAAGGGCAGTCTCTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAA
CAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCTTCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGT
TGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCTGAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAAC
CCTGCCAATGATATTCAAGTGAGAACTGGAGATTGTGATGTGAATGTGTAA
mRNA sequenceShow/hide mRNA sequence
ACGTTTGGACTTGAATATTTGCTAAAACCCTTGTAATTCTCTGATGTCCATTTCGTTACAGTTCAAGCTTAGTGGAAAGAAGTCTACAATGGCGTCCTTAAGGGCAGTCT
CTCGGCTATCATCTCGCCTGCAATCTCTCGCTCCAAAGCTCAACAAAAGGTCTCCATCTTCTGAGCTCTCTCCATTCAAATCGGCTTGTCAATCTCAGCCCTCTGCAGCT
TCTACATCGCGTGTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGTAGTCAGGGGTCACTGATGCCATTGCACAGCGCTATAGCTGCAGCTAGATTGATTTCGAGTCT
GAGCATTGAATCTCAAGGATGGGGGCTGGTTCCTCAGGGTAACCCTGCCAATGATATTCAAGTGAGAACTGGAGATTGTGATGTGAATGTGTAA
Protein sequenceShow/hide protein sequence
MSISLQFKLSGKKSTMASLRAVSRLSSRLQSLAPKLNKRSPSSELSPFKSACQSQPSAASTSRVSCTSRLPLELSSQGSLMPLHSAIAAARLISSLSIESQGWGLVPQGN
PANDIQVRTGDCDVNV