CuGenDBv2

Gene ID	CmoCh05G013890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S30
Genome location	Cmo_Chr05:10719095..10720530
RNA-Seq Expression	CmoCh05G013890
Synteny	CmoCh05G013890
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004497 - monooxygenase activity (molecular function) GO:0005506 - iron ion binding (molecular function) GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function) GO:0020037 - heme binding (molecular function) GO:0022857 - transmembrane transporter activity (molecular function)
InterPro domains	IPR006846 - Ribosomal protein S30

Homology

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GenBank top hits

e value

%identity

Alignment

CDP14733.1 unnamed protein product [Coffea canephora]

1.3e-25

100

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Query:  LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

ESQ42751.1 hypothetical protein EUTSA_v10015110mg [Eutrema salsugineum]

5.9e-26

73.33

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Query:  FCLAVSSVRSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        F +   ++  +H+C R   + ++  + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQ+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  FCLAVSSVRSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

EXB24685.1 40S ribosomal protein S30 [Morus notabilis]

1.0e-25

81.48

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Query:  CRRTSGRGE----DAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        C+  + +G+    +A + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  CRRTSGRGE----DAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAA0061505.1 Ribosomal protein S30 [Cucumis melo var. makuwa]

5.9e-26

91.55

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Query:  RGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        R +   R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  RGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

KAG6599498.1 40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-35

98.78

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Query:  RSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        RSEHACRRTSGRGE AFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  RSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

TrEMBL top hits

e value

%identity

Alignment

A0A068V4G4 40S ribosomal protein S30

6.4e-26

100

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Query:  LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  LAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A0A0LFS8 40S ribosomal protein S30

6.4e-26

98.46

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Query:  RLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  RLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

A0A5A7V6N6 40S ribosomal protein S30

2.9e-26

91.55

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Query:  RGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        R +   R AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  RGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

V4NAB3 40S ribosomal protein S30

2.9e-26

73.33

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Query:  FCLAVSSVRSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        F +   ++  +H+C R   + ++  + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQ+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  FCLAVSSVRSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

W9QWZ6 40S ribosomal protein S30

4.9e-26

81.48

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Query:  CRRTSGRGE----DAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        C+  + +G+    +A + AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Subjt:  CRRTSGRGE----DAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

SwissProt top hits

e value

%identity

Alignment

P49689 40S ribosomal protein S30

1.6e-26

96.77

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Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

P62860 40S ribosomal protein S30

6.2e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62861 40S ribosomal protein S30

6.2e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62862 40S ribosomal protein S30

6.2e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

P62866 40S ribosomal protein S30

6.2e-18

79.31

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Query:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
        KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Subjt:  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS

Arabidopsis top hits

e value

%identity

Alignment

AT2G19750.1 Ribosomal protein S30 family protein

1.2e-27

96.77

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Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT4G29390.1 Ribosomal protein S30 family protein

1.2e-27

96.77

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Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

AT5G56670.1 Ribosomal protein S30 family protein

1.2e-27

96.77

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Query:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
        MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Subjt:  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Sequences

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CDS sequence

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mRNA sequence

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ATGTTTTGCTTAGCAGTTTCTAGCGTTCGAAGCGAGCACGCCTGTCGCCGAACATCCGGAAGAGGGGAAGACGCTTTCAGATTAGCCATGGGTAAGGTTCACGGATCTTT
GGCTCGTGCCGGTAAGGTGAGAGGCCAGACTCCGAAGGTTGCCAAACAGGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAATCGTCGATTTG
TCACTGCCGTCGTTGGCTTCGGCAAGAAGAGAGGACCTAACTCGTCAGAGAAGTAAGAGTCTCGATAATTCGGCATAACAGCCATTCTTTCATGTTATTTAATATTTCTG
TTAGTTCTTCCTTGATGTGTTCACTCTGGCATTAATCTGGACAATGATAGCATTCGTTCTTTTAGAAGGTTTTTGTTTAGTCACTACATGTATCTTTTACGTCTAAGTTT
TGACGTTTCGCAATGAGATAAGTTTGTTAAGTTTTTGTTAATGGACATTGGCAAGGGATAATACTGTCGGAGTCGCGTGTTTGAATTTGGTTAGTGAATCAGTTAGAATT
GATCAATTTCTCGCAAGTAGGAGATCGAGC

Protein sequence

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MFCLAVSSVRSEHACRRTSGRGEDAFRLAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

CmoCh05G013890 (gene) of Cucurbita moschata (Rifu) v1 genome